HL_6GZX_217

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GGUGGGGGAUGCAAACCCCUC

Length

21 nucleotides

Bulged bases

6GZX|1|A2|U|796, 6GZX|1|A2|C|798, 6GZX|1|A2|A|800, 6GZX|1|A2|A|801

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZX|1|A2|G|787
6GZX|1|A2|G|788
6GZX|1|A2|U|789
6GZX|1|A2|G|790
6GZX|1|A2|G|791
6GZX|1|A2|G|792
6GZX|1|A2|G|793
6GZX|1|A2|G|794
6GZX|1|A2|A|795
6GZX|1|A2|U|796
6GZX|1|A2|G|797
6GZX|1|A2|C|798
6GZX|1|A2|A|799
6GZX|1|A2|A|800
6GZX|1|A2|A|801
6GZX|1|A2|C|802
6GZX|1|A2|C|803
6GZX|1|A2|C|804
6GZX|1|A2|C|805
6GZX|1|A2|U|806
6GZX|1|A2|C|807

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain D2

50S ribosomal protein L3

Chain R2

50S ribosomal protein L22

Chain a2

50S ribosomal protein L32

Chain c2

50S ribosomal protein L34