HL_6GZX_246

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GCAAUGGUCGUCAGC

Length

15 nucleotides

Bulged bases

6GZX|1|A1|G|1373, 6GZX|1|A1|U|1374, 6GZX|1|A1|U|1377, 6GZX|1|A1|G|1380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZX|1|A1|G|1367
6GZX|1|A1|C|1368
6GZX|1|A1|A|1369
6GZX|1|A1|A|1370
6GZX|1|A1|U|1371
6GZX|1|A1|G|1372
6GZX|1|A1|G|1373
6GZX|1|A1|U|1374
6GZX|1|A1|C|1375
6GZX|1|A1|G|1376
6GZX|1|A1|U|1377
6GZX|1|A1|C|1378
6GZX|1|A1|A|1379
6GZX|1|A1|G|1380
6GZX|1|A1|C|1381

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain M1

50S ribosomal protein L17

Chain R1

50S ribosomal protein L22

Chain S1

50S ribosomal protein L23