HL_6GZX_251

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

UUUAGG

Length

6 nucleotides

Bulged bases

6GZX|1|A2|U|876, 6GZX|1|A2|U|877, 6GZX|1|A2|A|878, 6GZX|1|A2|G|879

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZX_251 not in the Motif Atlas

Homologous match to HL_5J7L_157

Geometric discrepancy: 0.3941

The information below is about HL_5J7L_157

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55195.3

Basepair signature

cWW-F

Number of instances in this motif group

6

Unit IDs

6GZX|1|A2|U|875
6GZX|1|A2|U|876
6GZX|1|A2|U|877
6GZX|1|A2|A|878
6GZX|1|A2|G|879
6GZX|1|A2|G|880

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain K2

50S ribosomal protein L15