HL_6GZX_253

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

ACUGGCCGUGAAGAU

Length

15 nucleotides

Bulged bases

6GZX|1|A2|C|2045, 6GZX|1|A2|A|2054, 6GZX|1|A2|A|2055, 6GZX|1|A2|G|2056

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZX|1|A2|A|2044
6GZX|1|A2|C|2045
6GZX|1|A2|U|2046
6GZX|1|A2|G|2047
6GZX|1|A2|G|2048
6GZX|1|A2|C|2049
6GZX|1|A2|C|2050
6GZX|1|A2|G|2051
6GZX|1|A2|U|2052
6GZX|1|A2|G|2053
6GZX|1|A2|A|2054
6GZX|1|A2|A|2055
6GZX|1|A2|G|2056
6GZX|1|A2|A|2057
6GZX|1|A2|U|2058

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain D2

50S ribosomal protein L3

Chain I2

50S ribosomal protein L13

Chain P2

50S ribosomal protein L20

Chain a2

50S ribosomal protein L32