HL_6GZX_259

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

6GZX|1|A3|U|416, 6GZX|1|A3|C|417, 6GZX|1|A3|G|418

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZX_259 not in the Motif Atlas

Homologous match to HL_4LFB_011

Geometric discrepancy: 0.4797

The information below is about HL_4LFB_011

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

6GZX|1|A3|C|414
6GZX|1|A3|U|415
6GZX|1|A3|U|416
6GZX|1|A3|C|417
6GZX|1|A3|G|418
6GZX|1|A3|G|419

Current chains

Chain A3

16S ribosomal RNA

Nearby chains

Chain C3

30S ribosomal protein S3

Chain D3

30S ribosomal protein S4