HL_6GZZ_009

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GCUUGUC

Length

7 nucleotides

Bulged bases

6GZZ|1|A1|C|271, 6GZZ|1|A1|U|272, 6GZZ|1|A1|U|273, 6GZZ|1|A1|U|275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZZ_009 not in the Motif Atlas

Homologous match to HL_4WF9_009

Geometric discrepancy: 0.586

The information below is about HL_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6GZZ|1|A1|G|270
6GZZ|1|A1|C|271
6GZZ|1|A1|U|272
6GZZ|1|A1|U|273
6GZZ|1|A1|G|274
6GZZ|1|A1|U|275
6GZZ|1|A1|C|276

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain H1

50S ribosomal protein L9

Chain W1

50S ribosomal protein L28