6GZZ Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6GZZ_001 | 1/A1/58:67 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_6GZZ_192 | 1/A1/84:96 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_6GZZ_002 | 1/A1/86:93 | No text annotation | ||
| HL_6GZZ_003 | 1/A1/121:126 | No text annotation | homologous HL_4WF9_003 HL_75660.5 | |
| HL_6GZZ_004 | 1/A1/136:141 | No text annotation | homologous HL_7RQB_004 NA | |
| HL_6GZZ_005 | 1/A1/153:163 | No text annotation | ||
| HL_6GZZ_006 | 1/A1/178:198 | No text annotation | ||
| HL_6GZZ_007 | 1/A1/215:220 | No text annotation | homologous HL_7A0S_007 HL_53890.2 | |
| HL_6GZZ_008 | 1/A1/229:248 | No text annotation | ||
| HL_6GZZ_009 | 1/A1/270:276 | No text annotation | homologous HL_4WF9_009 HL_81100.2 | |
| HL_6GZZ_010 | 1/A1/328:339 | No text annotation | ||
| HL_6GZZ_011 | 1/A1/352:360 | T-loop with unstacked turn | homologous HL_4WF9_012 HL_27670.2 | |
| HL_6GZZ_012 | 1/A1/410:420 | No text annotation | homologous HL_7RQB_013 NA | |
| HL_6GZZ_237 | 1/A1/437:446 | No text annotation | ||
| HL_6GZZ_194 | 1/A1/490:495 | GNRA | homologous HL_4WF9_015 HL_37824.7 | |
| HL_6GZZ_015 | 1/A1/515:520 | GNRA | homologous HL_4WF9_016 HL_37824.7 | |
| HL_6GZZ_195 | 1/A1/564:581 | No text annotation | ||
| HL_6GZZ_016 | 1/A1/569:576 | No text annotation | ||
| HL_6GZZ_017 | 1/A1/591:600 | No text annotation | homologous HL_7RQB_018 NA | |
| HL_6GZZ_018 | 1/A1/637:643 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_6GZZ_019 | 1/A1/656:661 | GNRA | homologous HL_4WF9_020 HL_37824.7 | |
| HL_6GZZ_020 | 1/A1/668:674 | No text annotation | geometric HL_8C3A_039 NA | |
| HL_6GZZ_196 | 1/A1/756:773 | No text annotation | ||
| HL_6GZZ_021 | 1/A1/758:771 | No text annotation | ||
| HL_6GZZ_022 | 1/A1/793:802 | No text annotation | homologous HL_7A0S_022 HL_88205.2 | |
| HL_6GZZ_023 | 1/A1/828:834 | No text annotation | homologous HL_4WF9_024 HL_87954.2 | |
| HL_6GZZ_024 | 1/A1/874:881 | No text annotation | geometric HL_7KI3_001 HL_75660.5 | |
| HL_6GZZ_025 | 1/A1/931:942 | No text annotation | geometric HL_5XUZ_001 HL_69752.2 | |
| HL_6GZZ_197 | 1/A1/999:1012 | No text annotation | ||
| HL_6GZZ_026 | 1/A1/1002:1009 | GNRA | homologous HL_7RQB_027 NA | |
| HL_6GZZ_027 | 1/A1/1026:1033 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_6GZZ_028 | 1/A1/1086:1165 | No text annotation | ||
| HL_6GZZ_029 | 1/A1/1219:1225 | No text annotation | ||
| HL_6GZZ_030 | 1/A1/1270:1275 | GNRA | homologous HL_7RQB_032 NA | |
| HL_6GZZ_031 | 1/A1/1325:1341 | No text annotation | ||
| HL_6GZZ_198 | 1/A1/1363:1385 | No text annotation | ||
| HL_6GZZ_032 | 1/A1/1371:1379 | No text annotation | ||
| HL_6GZZ_033 | 1/A1/1411:1416 | GNRA | homologous HL_7RQB_035 NA | |
| HL_6GZZ_238 | 1/A1/1437:1446 | No text annotation | homologous HL_9DFE_034 HL_81545.2 | |
| HL_6GZZ_035 | 1/A1/1499:1511 | No text annotation | ||
| HL_6GZZ_239 | 1/A1/1537:1548 | No text annotation | ||
| HL_6GZZ_037 | 1/A1/1614:1617 | Mini UNCG | homologous HL_4WF9_037 HL_48778.2 | |
| HL_6GZZ_199 | 1/A1/1660:1668 | No text annotation | ||
| HL_6GZZ_038 | 1/A1/1676:1687 | No text annotation | ||
| HL_6GZZ_039 | 1/A1/1740:1745 | UNCG | homologous HL_4WF9_040 HL_34617.5 | |
| HL_6GZZ_040 | 1/A1/1763:1777 | No text annotation | ||
| HL_6GZZ_041 | 1/A1/1785:1789 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_6GZZ_042 | 1/A1/1809:1821 | No text annotation | homologous HL_7A0S_045 HL_60266.1 | |
| HL_6GZZ_043 | 1/A1/1839:1844 | GNRA related | homologous HL_5J7L_179 HL_04783.2 | |
| HL_6GZZ_044 | 1/A1/1895:1904 | Externally structured | geometric HL_5TBW_022 NA | |
| HL_6GZZ_045 | 1/A1/1933:1945 | No text annotation | ||
| HL_6GZZ_240 | 1/A1/1971:1983 | No text annotation | ||
| HL_6GZZ_046 | 1/A1/1973:1981 | No text annotation | homologous HL_4WF9_046 HL_20167.2 | |
| HL_6GZZ_047 | 1/A1/2051:2060 | No text annotation | homologous HL_7A0S_049 HL_61996.2 | |
| HL_6GZZ_048 | 1/A1/2144:2202 | No text annotation | ||
| HL_6GZZ_049 | 1/A1/2228:2233 | Mini UNCG | geometric HL_4TUW_002 HL_56334.1 | |
| HL_6GZZ_050 | 1/A1/2262:2270 | No text annotation | homologous HL_4WF9_049 HL_85367.2 | |
| HL_6GZZ_241 | 1/A1/2277:2291 | No text annotation | ||
| HL_6GZZ_201 | 1/A1/2297:2339 | No text annotation | ||
| HL_6GZZ_052 | 1/A1/2338:2345 | Pseudoknot geometry | homologous HL_7A0S_055 HL_93324.4 | |
| HL_6GZZ_053 | 1/A1/2364:2381 | No text annotation | ||
| HL_6GZZ_054 | 1/A1/2387:2394 | No text annotation | ||
| HL_6GZZ_055 | 1/A1/2414:2430 | No text annotation | ||
| HL_6GZZ_056 | 1/A1/2485:2493 | No text annotation | ||
| HL_6GZZ_057 | 1/A1/2536:2557 | No text annotation | ||
| HL_6GZZ_058 | 1/A1/2564:2572 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_6GZZ_059 | 1/A1/2608:2613 | GNRA | homologous HL_7A0S_062 HL_37824.7 | |
| HL_6GZZ_060 | 1/A1/2666:2682 | No text annotation | ||
| HL_6GZZ_061 | 1/A1/2713:2722 | No text annotation | ||
| HL_6GZZ_062 | 1/A1/2759:2775 | No text annotation | homologous HL_7A0S_074 NA | |
| HL_6GZZ_242 | 1/A1/2830:2840 | No text annotation | ||
| HL_6GZZ_064 | 1/A1/2868:2873 | GNRA | homologous HL_7RQB_069 NA | |
| HL_6GZZ_065 | 1/A2/58:67 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_6GZZ_066 | 1/A2/84:96 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_6GZZ_067 | 1/A2/121:126 | No text annotation | homologous HL_4WF9_003 HL_75660.5 | |
| HL_6GZZ_068 | 1/A2/136:141 | No text annotation | homologous HL_7RQB_004 NA | |
| HL_6GZZ_243 | 1/A2/155:161 | No text annotation | ||
| HL_6GZZ_070 | 1/A2/178:198 | No text annotation | ||
| HL_6GZZ_071 | 1/A2/215:220 | No text annotation | homologous HL_7A0S_007 HL_53890.2 | |
| HL_6GZZ_072 | 1/A2/229:248 | No text annotation | ||
| HL_6GZZ_073 | 1/A2/270:276 | No text annotation | homologous HL_4WF9_009 HL_81100.2 | |
| HL_6GZZ_074 | 1/A2/328:339 | No text annotation | ||
| HL_6GZZ_075 | 1/A2/344:348 | No text annotation | homologous HL_5J7L_143 HL_75660.5 | |
| HL_6GZZ_076 | 1/A2/352:360 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
| HL_6GZZ_077 | 1/A2/410:420 | No text annotation | homologous HL_7RQB_013 NA | |
| HL_6GZZ_078 | 1/A2/437:446 | Pseudoknot geometry | geometric HL_3D0U_002 HL_93324.4 | |
| HL_6GZZ_206 | 1/A2/490:495 | GNRA | homologous HL_4WF9_015 HL_37824.7 | |
| HL_6GZZ_080 | 1/A2/515:520 | GNRA | homologous HL_4WF9_016 HL_37824.7 | |
| HL_6GZZ_207 | 1/A2/566:579 | No text annotation | ||
| HL_6GZZ_081 | 1/A2/569:576 | No text annotation | ||
| HL_6GZZ_082 | 1/A2/591:600 | No text annotation | geometric HL_7RQB_018 NA | |
| HL_6GZZ_083 | 1/A2/637:643 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_6GZZ_084 | 1/A2/656:661 | GNRA | homologous HL_4WF9_020 HL_37824.7 | |
| HL_6GZZ_085 | 1/A2/668:674 | GNRA | homologous HL_9DFE_019 HL_37824.7 | |
| HL_6GZZ_244 | 1/A2/761:768 | No text annotation | ||
| HL_6GZZ_087 | 1/A2/793:802 | No text annotation | geometric HL_7A0S_022 HL_88205.2 | |
| HL_6GZZ_088 | 1/A2/828:834 | No text annotation | homologous HL_4WF9_024 HL_87954.2 | |
| HL_6GZZ_089 | 1/A2/874:881 | No text annotation | ||
| HL_6GZZ_090 | 1/A2/924:950 | No text annotation | ||
| HL_6GZZ_209 | 1/A2/999:1012 | No text annotation | ||
| HL_6GZZ_091 | 1/A2/1002:1009 | GNRA | homologous HL_7RQB_027 NA | |
| HL_6GZZ_092 | 1/A2/1026:1033 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_6GZZ_245 | 1/A2/1091:1160 | No text annotation | ||
| HL_6GZZ_093 | 1/A2/1100:1155 | No text annotation | ||
| HL_6GZZ_094 | 1/A2/1219:1225 | No text annotation | ||
| HL_6GZZ_095 | 1/A2/1270:1275 | GNRA | homologous HL_7RQB_032 NA | |
| HL_6GZZ_096 | 1/A2/1325:1341 | No text annotation | ||
| HL_6GZZ_097 | 1/A2/1365:1383 | No text annotation | ||
| HL_6GZZ_098 | 1/A2/1405:1422 | No text annotation | ||
| HL_6GZZ_099 | 1/A2/1437:1446 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_6GZZ_100 | 1/A2/1497:1512 | No text annotation | ||
| HL_6GZZ_101 | 1/A2/1536:1549 | No text annotation | ||
| HL_6GZZ_102 | 1/A2/1614:1617 | Mini UNCG | homologous HL_4WF9_037 HL_48778.2 | |
| HL_6GZZ_103 | 1/A2/1659:1668 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_6GZZ_104 | 1/A2/1676:1687 | No text annotation | ||
| HL_6GZZ_105 | 1/A2/1740:1745 | UNCG | homologous HL_4WF9_040 HL_34617.5 | |
| HL_6GZZ_106 | 1/A2/1766:1774 | No text annotation | ||
| HL_6GZZ_107 | 1/A2/1785:1789 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_6GZZ_108 | 1/A2/1809:1821 | No text annotation | homologous HL_7A0S_045 HL_60266.1 | |
| HL_6GZZ_109 | 1/A2/1839:1844 | GNRA related | homologous HL_5J7L_179 HL_04783.2 | |
| HL_6GZZ_110 | 1/A2/1895:1904 | No text annotation | ||
| HL_6GZZ_246 | 1/A2/1971:1983 | No text annotation | ||
| HL_6GZZ_111 | 1/A2/1973:1981 | No text annotation | homologous HL_4WF9_046 HL_20167.2 | |
| HL_6GZZ_112 | 1/A2/2051:2060 | No text annotation | homologous HL_7A0S_049 HL_61996.2 | |
| HL_6GZZ_113 | 1/A2/2120:2217 | No text annotation | ||
| HL_6GZZ_114 | 1/A2/2228:2233 | Mini UNCG | geometric HL_4TUW_002 HL_56334.1 | |
| HL_6GZZ_247 | 1/A2/2262:2270 | No text annotation | homologous HL_7A0S_052 HL_85367.2 | |
| HL_6GZZ_116 | 1/A2/2276:2292 | No text annotation | ||
| HL_6GZZ_213 | 1/A2/2314:2331 | No text annotation | ||
| HL_6GZZ_117 | 1/A2/2315:2329 | No text annotation | ||
| HL_6GZZ_118 | 1/A2/2370:2376 | No text annotation | geometric HL_4LFB_002 HL_31585.4 | |
| HL_6GZZ_119 | 1/A2/2387:2394 | No text annotation | geometric HL_8VTW_025 NA | |
| HL_6GZZ_120 | 1/A2/2414:2430 | No text annotation | ||
| HL_6GZZ_121 | 1/A2/2479:2499 | No text annotation | ||
| HL_6GZZ_122 | 1/A2/2542:2549 | No text annotation | geometric HL_7RQB_009 NA | |
| HL_6GZZ_123 | 1/A2/2564:2572 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_6GZZ_124 | 1/A2/2608:2613 | GNRA | homologous HL_7A0S_062 HL_37824.7 | |
| HL_6GZZ_214 | 1/A2/2666:2682 | No text annotation | ||
| HL_6GZZ_125 | 1/A2/2672:2677 | UNCG variation | geometric HL_1P6V_001 HL_53890.2 | |
| HL_6GZZ_126 | 1/A2/2713:2722 | No text annotation | ||
| HL_6GZZ_127 | 1/A2/2759:2775 | No text annotation | homologous HL_7A0S_074 NA | |
| HL_6GZZ_248 | 1/A2/2830:2840 | No text annotation | ||
| HL_6GZZ_129 | 1/A2/2868:2873 | GNRA | homologous HL_7RQB_069 NA | |
| HL_6GZZ_216 | 1/A3/12:22 | No text annotation | homologous HL_5J7L_001 HL_89881.5 | |
| HL_6GZZ_131 | 1/A3/67:95 | No text annotation | ||
| HL_6GZZ_132 | 1/A3/152:157 | GNRA | homologous HL_5J7L_003 HL_37824.7 | |
| HL_6GZZ_133 | 1/A3/186:191 | No text annotation | homologous HL_6CZR_075 NA | |
| HL_6GZZ_134 | 1/A3/204:213 | No text annotation | ||
| HL_6GZZ_249 | 1/A3/254:262 | GNRA related | homologous HL_4LFB_006 HL_84299.4 | |
| HL_6GZZ_219 | 1/A3/287:303 | No text annotation | ||
| HL_6GZZ_136 | 1/A3/291:296 | GNRA | homologous HL_4LFB_007 HL_37824.7 | |
| HL_6GZZ_137 | 1/A3/315:328 | No text annotation | homologous HL_5J7L_008 HL_81205.3 | |
| HL_6GZZ_138 | 1/A3/337:342 | UNCG | homologous HL_4LFB_009 HL_34617.5 | |
| HL_6GZZ_221 | 1/A3/372:381 | No text annotation | ||
| HL_6GZZ_139 | 1/A3/374:379 | GNRA | homologous HL_6CZR_081 NA | |
| HL_6GZZ_222 | 1/A3/413:420 | No text annotation | ||
| HL_6GZZ_141 | 1/A3/452:458 | No text annotation | geometric HL_5TBW_044 NA | |
| HL_6GZZ_142 | 1/A3/504:511 | UNCG variation | geometric HL_1P6V_001 HL_53890.2 | |
| HL_6GZZ_143 | 1/A3/600:606 | No text annotation | homologous HL_5J7L_014 HL_10453.3 | |
| HL_6GZZ_144 | 1/A3/665:691 | No text annotation | ||
| HL_6GZZ_145 | 1/A3/769:779 | No text annotation | homologous HL_6CZR_088 NA | |
| HL_6GZZ_146 | 1/A3/821:825 | Mini UNCG | homologous HL_4LFB_018 HL_48778.2 | |
| HL_6GZZ_147 | 1/A3/839:844 | GNRA | homologous HL_4LFB_019 HL_37824.7 | |
| HL_6GZZ_148 | 1/A3/874:879 | GNRA | homologous HL_4LFB_020 HL_37824.7 | |
| HL_6GZZ_149 | 1/A3/939:950 | No text annotation | geometric HL_6UFM_001 HL_04642.1 | |
| HL_6GZZ_150 | 1/A3/989:996 | No text annotation | homologous HL_6CZR_093 NA | |
| HL_6GZZ_250 | 1/A3/1058:1063 | GNRA | homologous HL_5J7L_023 HL_37824.7 | |
| HL_6GZZ_225 | 1/A3/1071:1078 | T-loop related | homologous HL_5J7L_024 HL_77436.5 | |
| HL_6GZZ_251 | 1/A3/1147:1152 | GNRA | homologous HL_4LFB_027 HL_37824.7 | |
| HL_6GZZ_154 | 1/A3/1246:1251 | GNRA related | geometric HL_3OXE_002 HL_04783.2 | |
| HL_6GZZ_155 | 1/A3/1295:1304 | T-loop with 3 stacked bulged bases | homologous HL_5J7L_028 HL_02887.3 | |
| HL_6GZZ_156 | 1/A3/1335:1350 | No text annotation | ||
| HL_6GZZ_157 | 1/A3/1422:1438 | No text annotation | ||
| HL_6GZZ_158 | 1/A3/1492:1497 | GNRA | geometric HL_6CU1_002 HL_37824.7 | |
| HL_6GZZ_226 | 1/A4/12:22 | No text annotation | homologous HL_5J7L_001 HL_89881.5 | |
| HL_6GZZ_252 | 1/A4/63:97 | No text annotation | ||
| HL_6GZZ_160 | 1/A4/67:95 | No text annotation | ||
| HL_6GZZ_161 | 1/A4/152:157 | GNRA | homologous HL_5J7L_003 HL_37824.7 | |
| HL_6GZZ_162 | 1/A4/184:193 | No text annotation | ||
| HL_6GZZ_253 | 1/A4/254:262 | GNRA related | homologous HL_4LFB_006 HL_84299.4 | |
| HL_6GZZ_229 | 1/A4/287:303 | No text annotation | ||
| HL_6GZZ_164 | 1/A4/291:296 | GNRA | homologous HL_4LFB_007 HL_37824.7 | |
| HL_6GZZ_165 | 1/A4/315:328 | No text annotation | homologous HL_5J7L_008 HL_81205.3 | |
| HL_6GZZ_254 | 1/A4/335:344 | No text annotation | ||
| HL_6GZZ_167 | 1/A4/372:381 | No text annotation | geometric HL_7KI3_001 HL_75660.5 | |
| HL_6GZZ_168 | 1/A4/412:420 | No text annotation | ||
| HL_6GZZ_169 | 1/A4/452:458 | No text annotation | ||
| HL_6GZZ_170 | 1/A4/504:511 | UNCG variation | geometric HL_1P6V_001 HL_53890.2 | |
| HL_6GZZ_171 | 1/A4/600:606 | No text annotation | homologous HL_6CZR_085 NA | |
| HL_6GZZ_172 | 1/A4/665:691 | No text annotation | ||
| HL_6GZZ_173 | 1/A4/769:779 | No text annotation | geometric HL_2ZZN_004 HL_09452.1 | |
| HL_6GZZ_174 | 1/A4/821:825 | Mini UNCG | homologous HL_4LFB_018 HL_48778.2 | |
| HL_6GZZ_175 | 1/A4/839:844 | GNRA | homologous HL_6CZR_090 NA | |
| HL_6GZZ_176 | 1/A4/874:879 | GNRA | homologous HL_4LFB_020 HL_37824.7 | |
| HL_6GZZ_177 | 1/A4/939:950 | No text annotation | geometric HL_5AMQ_001 HL_48417.5 | |
| HL_6GZZ_178 | 1/A4/988:997 | No text annotation | geometric HL_8KAL_008 NA | |
| HL_6GZZ_179 | 1/A4/1057:1064 | No text annotation | ||
| HL_6GZZ_180 | 1/A4/1070:1079 | No text annotation | ||
| HL_6GZZ_232 | 1/A4/1102:1135 | No text annotation | ||
| HL_6GZZ_181 | 1/A4/1110:1125 | No text annotation | ||
| HL_6GZZ_255 | 1/A4/1147:1152 | GNRA | homologous HL_4LFB_027 HL_37824.7 | |
| HL_6GZZ_183 | 1/A4/1244:1253 | No text annotation | ||
| HL_6GZZ_184 | 1/A4/1295:1304 | T-loop with 3 stacked bulged bases | homologous HL_5J7L_028 HL_02887.3 | |
| HL_6GZZ_185 | 1/A4/1335:1350 | No text annotation | ||
| HL_6GZZ_256 | 1/A4/1429:1434 | No text annotation | ||
| HL_6GZZ_187 | 1/A4/1492:1497 | GNRA | geometric HL_3NPQ_001 HL_37824.7 | |
| HL_6GZZ_234 | 1/B1/19:69 | No text annotation | ||
| HL_6GZZ_188 | 1/B1/23:64 | No text annotation | ||
| HL_6GZZ_235 | 1/B1/71:110 | No text annotation | ||
| HL_6GZZ_189 | 1/B1/81:100 | No text annotation | ||
| HL_6GZZ_236 | 1/B2/19:69 | No text annotation | ||
| HL_6GZZ_190 | 1/B2/23:64 | No text annotation | ||
| HL_6GZZ_191 | 1/B2/88:93 | GNRA | homologous HL_7A0S_070 HL_37824.7 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6GZZ_193 | No text annotation | ||
| HL_6GZZ_013 | No text annotation | ||
| HL_6GZZ_014 | GNRA with extra cWW | ||
| HL_6GZZ_034 | No text annotation | ||
| HL_6GZZ_036 | No text annotation | ||
| HL_6GZZ_200 | No text annotation | ||
| HL_6GZZ_051 | No text annotation | ||
| HL_6GZZ_202 | No text annotation | ||
| HL_6GZZ_063 | No text annotation | ||
| HL_6GZZ_069 | No text annotation | ||
| HL_6GZZ_203 | No text annotation | ||
| HL_6GZZ_204 | No text annotation | ||
| HL_6GZZ_205 | No text annotation | ||
| HL_6GZZ_079 | GNRA with extra cWW | ||
| HL_6GZZ_086 | No text annotation | ||
| HL_6GZZ_208 | No text annotation | ||
| HL_6GZZ_210 | No text annotation | ||
| HL_6GZZ_211 | No text annotation | ||
| HL_6GZZ_212 | No text annotation | ||
| HL_6GZZ_115 | No text annotation | ||
| HL_6GZZ_215 | No text annotation | ||
| HL_6GZZ_128 | No text annotation | ||
| HL_6GZZ_130 | No text annotation | ||
| HL_6GZZ_217 | No text annotation | ||
| HL_6GZZ_218 | No text annotation | ||
| HL_6GZZ_135 | tRNA D-loop | ||
| HL_6GZZ_220 | No text annotation | ||
| HL_6GZZ_140 | No text annotation | ||
| HL_6GZZ_223 | GNRA with near cWW | ||
| HL_6GZZ_224 | No text annotation | ||
| HL_6GZZ_151 | No text annotation | ||
| HL_6GZZ_152 | No text annotation | ||
| HL_6GZZ_153 | tRNA anticodon loop | ||
| HL_6GZZ_159 | No text annotation | ||
| HL_6GZZ_227 | No text annotation | ||
| HL_6GZZ_228 | No text annotation | ||
| HL_6GZZ_163 | No text annotation | ||
| HL_6GZZ_166 | No text annotation | ||
| HL_6GZZ_230 | GNRA with near cWW | ||
| HL_6GZZ_231 | No text annotation | ||
| HL_6GZZ_182 | tRNA anticodon loop | ||
| HL_6GZZ_186 | No text annotation | ||
| HL_6GZZ_233 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6GZZ_001 | 1/A1/24:30, 1/A1/537:543 | Triple sheared with non-canonical cWW | homologous IL_7A0S_001 IL_04021.2 | |
| IL_6GZZ_307 | 1/A1/80:84, 1/A1/96:103 | Kink-turn | homologous IL_4WF9_004 IL_01488.3 | |
| IL_6GZZ_003 | 1/A1/84:86, 1/A1/93:96 | No text annotation | ||
| IL_6GZZ_004 | 1/A1/291:295, 1/A1/392:396 | No text annotation | ||
| IL_6GZZ_005 | 1/A1/295:296, 1/A1/390:392 | Single stack bend | geometric IL_4V9F_081 IL_26793.1 | |
| IL_6GZZ_308 | 1/A1/297:320, 1/A1/368:389 | No text annotation | ||
| IL_6GZZ_006 | 1/A1/317:320, 1/A1/368:373 | No text annotation | ||
| IL_6GZZ_007 | 1/A1/406:410, 1/A1/420:425 | No text annotation | ||
| IL_6GZZ_008 | 1/A1/514:515, 1/A1/520:522 | Single stack bend | geometric IL_2QWY_008 IL_90729.1 | |
| IL_6GZZ_009 | 1/A1/562:564, 1/A1/581:584 | No text annotation | ||
| IL_6GZZ_010 | 1/A1/589:591, 1/A1/600:602 | Isolated non-canonical cWW pair | geometric IL_7A0S_011 IL_07785.1 | |
| IL_6GZZ_011 | 1/A1/622:624, 1/A1/708:709 | Single stack bend | geometric IL_7KGA_003 IL_90729.1 | |
| IL_6GZZ_309 | 1/A1/625:626, 1/A1/705:707 | Single stack bend | geometric IL_8P9A_298 IL_90729.1 | |
| IL_6GZZ_013 | 1/A1/629:636, 1/A1/644:651 | No text annotation | ||
| IL_6GZZ_310 | 1/A1/731:740, 1/A1/820:844 | No text annotation | ||
| IL_6GZZ_014 | 1/A1/746:747, 1/A1/812:814 | Single bulged A | homologous IL_7A0S_016 IL_31462.6 | |
| IL_6GZZ_311 | 1/A1/787:790, 1/A1/805:807 | No text annotation | homologous IL_9DFE_020 IL_51387.2 | |
| IL_6GZZ_016 | 1/A1/824:827, 1/A1/835:840 | No text annotation | ||
| IL_6GZZ_312 | 1/A1/886:889, 1/A1/985:989 | No text annotation | ||
| IL_6GZZ_018 | 1/A1/893:899, 1/A1/975:981 | No text annotation | homologous IL_9DFE_024 IL_68243.1 | |
| IL_6GZZ_019 | 1/A1/907:911, 1/A1/963:967 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7RQB_027 NA | |
| IL_6GZZ_223 | 1/A1/907:918, 1/A1/956:967 | No text annotation | ||
| IL_6GZZ_020 | 1/A1/911:912, 1/A1/961:963 | Single bulged G | homologous IL_5J7L_271 IL_00225.13 | |
| IL_6GZZ_021 | 1/A1/913:918, 1/A1/956:960 | No text annotation | geometric IL_4V9F_035 IL_06691.1 | |
| IL_6GZZ_022 | 1/A1/924:931, 1/A1/942:950 | No text annotation | ||
| IL_6GZZ_023 | 1/A1/999:1002, 1/A1/1009:1012 | Tandem non-canonical cWW pairs | geometric IL_1MFQ_004 IL_85033.2 | |
| IL_6GZZ_024 | 1/A1/1042:1044, 1/A1/1207:1208 | Single bulged C | homologous IL_7A0S_032 IL_61258.15 | |
| IL_6GZZ_025 | 1/A1/1046:1050, 1/A1/1201:1205 | UAA/GAN | homologous IL_7A0S_033 IL_38507.2 | |
| IL_6GZZ_026 | 1/A1/1051:1059, 1/A1/1198:1200 | No text annotation | ||
| IL_6GZZ_027 | 1/A1/1059:1061, 1/A1/1197:1198 | Single bulged U | geometric IL_4V9F_039 IL_89505.4 | |
| IL_6GZZ_028 | 1/A1/1062:1064, 1/A1/1195:1196 | Single stack bend | geometric IL_4WF9_007 IL_90729.1 | |
| IL_6GZZ_029 | 1/A1/1064:1072, 1/A1/1187:1195 | No text annotation | ||
| IL_6GZZ_030 | 1/A1/1072:1078, 1/A1/1172:1187 | No text annotation | homologous IL_7A0S_037 IL_50715.3 | |
| IL_6GZZ_031 | 1/A1/1079:1082, 1/A1/1169:1171 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
| IL_6GZZ_032 | 1/A1/1243:1245, 1/A1/1295:1298 | Isolated near basepair | geometric IL_4V88_406 NA | |
| IL_6GZZ_224 | 1/A1/1243:1248, 1/A1/1293:1298 | No text annotation | ||
| IL_6GZZ_033 | 1/A1/1245:1248, 1/A1/1293:1295 | No text annotation | ||
| IL_6GZZ_313 | 1/A1/1249:1262, 1/A1/1282:1292 | No text annotation | ||
| IL_6GZZ_034 | 1/A1/1266:1268, 1/A1/1277:1278 | Single bulged A | homologous IL_7RQB_048 NA | |
| IL_6GZZ_227 | 1/A1/1346:1354, 1/A1/1670:1691 | No text annotation | ||
| IL_6GZZ_035 | 1/A1/1354:1357, 1/A1/1653:1670 | No text annotation | ||
| IL_6GZZ_037 | 1/A1/1365:1371, 1/A1/1379:1383 | No text annotation | ||
| IL_6GZZ_038 | 1/A1/1399:1405, 1/A1/1422:1428 | No text annotation | ||
| IL_6GZZ_039 | 1/A1/1405:1411, 1/A1/1416:1422 | No text annotation | ||
| IL_6GZZ_040 | 1/A1/1481:1483, 1/A1/1606:1609 | Isolated tWW turn | homologous IL_7RQB_056 NA | |
| IL_6GZZ_041 | 1/A1/1485:1489, 1/A1/1599:1604 | No text annotation | ||
| IL_6GZZ_042 | 1/A1/1497:1499, 1/A1/1511:1512 | Single stack bend | homologous IL_7RQB_058 NA | |
| IL_6GZZ_314 | 1/A1/1518:1522, 1/A1/1568:1571 | No text annotation | homologous IL_9DFE_059 IL_23774.1 | |
| IL_6GZZ_315 | 1/A1/1530:1534, 1/A1/1551:1560 | No text annotation | ||
| IL_6GZZ_045 | 1/A1/1700:1705, 1/A1/2028:2030 | No text annotation | homologous IL_5J7L_304 IL_12566.4 | |
| IL_6GZZ_046 | 1/A1/1712:1723, 1/A1/2014:2021 | No text annotation | ||
| IL_6GZZ_047 | 1/A1/1735:1740, 1/A1/1745:1751 | tSH-tSH-tHH-tHS | homologous IL_7RQB_068 NA | |
| IL_6GZZ_048 | 1/A1/1803:1805, 1/A1/2003:2006 | Isolated non-canonical cWW pair | geometric IL_5UNE_007 IL_87907.2 | |
| IL_6GZZ_316 | 1/A1/1831:1837, 1/A1/1846:1854 | No text annotation | homologous IL_9DFE_070 IL_17069.5 | |
| IL_6GZZ_050 | 1/A1/1870:1873, 1/A1/1926:1927 | Minor groove platform, major groove intercalation | homologous IL_7A0S_066 IL_95583.2 | |
| IL_6GZZ_051 | 1/A1/1874:1875, 1/A1/1922:1925 | Major groove intercalation | homologous IL_7A0S_067 IL_66635.5 | |
| IL_6GZZ_052 | 1/A1/1879:1884, 1/A1/1915:1918 | No text annotation | ||
| IL_6GZZ_053 | 1/A1/1884:1888, 1/A1/1911:1915 | UAA/GAN with extra pair | homologous IL_4WF9_073 IL_89021.2 | |
| IL_6GZZ_054 | 1/A1/1889:1895, 1/A1/1904:1910 | No text annotation | ||
| IL_6GZZ_055 | 1/A1/1957:1969, 1/A1/1985:1991 | No text annotation | ||
| IL_6GZZ_056 | 1/A1/2074:2076, 1/A1/2631:2632 | Major groove platform | homologous IL_4WF9_078 IL_48076.6 | |
| IL_6GZZ_057 | 1/A1/2090:2097, 1/A1/2450:2458 | No text annotation | ||
| IL_6GZZ_058 | 1/A1/2105:2107, 1/A1/2250:2253 | Isolated tHS basepair with bulges | geometric IL_7RQB_012 NA | |
| IL_6GZZ_059 | 1/A1/2107:2109, 1/A1/2249:2250 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_6GZZ_060 | 1/A1/2109:2111, 1/A1/2246:2249 | No text annotation | geometric IL_4V87_185 NA | |
| IL_6GZZ_232 | 1/A1/2120:2144, 1/A1/2202:2217 | No text annotation | ||
| IL_6GZZ_061 | 1/A1/2303:2305, 1/A1/2355:2358 | No text annotation | geometric IL_4N0T_004 IL_99358.1 | |
| IL_6GZZ_062 | 1/A1/2307:2338, 1/A1/2345:2353 | No text annotation | ||
| IL_6GZZ_233 | 1/A1/2340:2343, 1/A1/2400:2403 | No text annotation | ||
| IL_6GZZ_234 | 1/A1/2344:2386, 1/A1/2395:2399 | No text annotation | ||
| IL_6GZZ_317 | 1/A1/2471:2477, 1/A1/2501:2508 | No text annotation | ||
| IL_6GZZ_064 | 1/A1/2480:2484, 1/A1/2494:2498 | Triple sheared | homologous IL_7A0S_087 IL_17948.2 | |
| IL_6GZZ_065 | 1/A1/2524:2527, 1/A1/2585:2592 | No text annotation | ||
| IL_6GZZ_318 | 1/A1/2605:2606, 1/A1/2615:2617 | No text annotation | ||
| IL_6GZZ_067 | 1/A1/2650:2655, 1/A1/2788:2797 | No text annotation | ||
| IL_6GZZ_319 | 1/A1/2694:2698, 1/A1/2740:2742 | C-loop | homologous IL_5J7L_347 IL_63596.11 | |
| IL_6GZZ_320 | 1/A1/2700:2705, 1/A1/2733:2738 | No text annotation | ||
| IL_6GZZ_070 | 1/A1/2709:2710, 1/A1/2725:2729 | Multiple bulged bases | homologous IL_7A0S_097 IL_42626.2 | |
| IL_6GZZ_071 | 1/A1/2751:2757, 1/A1/2777:2783 | No text annotation | ||
| IL_6GZZ_321 | 1/A1/2752:2759, 1/A1/2775:2782 | No text annotation | ||
| IL_6GZZ_072 | 1/A1/2850:2853, 1/A1/2889:2892 | No text annotation | ||
| IL_6GZZ_073 | 1/A1/2853:2854, 1/A1/2887:2889 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_6GZZ_074 | 1/A1/2854:2857, 1/A1/2883:2887 | No text annotation | ||
| IL_6GZZ_075 | 1/A1/2859:2865, 1/A1/2876:2881 | No text annotation | ||
| IL_6GZZ_241 | 1/A1/2859:2866, 1/A1/2875:2881 | No text annotation | ||
| IL_6GZZ_076 | 1/A2/24:30, 1/A2/537:543 | Triple sheared with non-canonical cWW | homologous IL_7A0S_001 IL_04021.2 | |
| IL_6GZZ_077 | 1/A2/35:39, 1/A2/468:473 | Partly complementary | geometric IL_7VYX_008 IL_49751.4 | |
| IL_6GZZ_242 | 1/A2/54:76, 1/A2/107:113 | No text annotation | ||
| IL_6GZZ_322 | 1/A2/79:84, 1/A2/96:104 | Kink-turn | geometric IL_4LFB_031 IL_95727.1 | |
| IL_6GZZ_243 | 1/A2/291:295, 1/A2/392:396 | No text annotation | ||
| IL_6GZZ_080 | 1/A2/295:296, 1/A2/390:392 | Single stack bend | geometric IL_4V9F_081 IL_26793.1 | |
| IL_6GZZ_244 | 1/A2/296:297, 1/A2/389:391 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
| IL_6GZZ_323 | 1/A2/297:316, 1/A2/374:389 | No text annotation | ||
| IL_6GZZ_081 | 1/A2/317:322, 1/A2/366:373 | No text annotation | ||
| IL_6GZZ_082 | 1/A2/406:410, 1/A2/420:425 | No text annotation | ||
| IL_6GZZ_083 | 1/A2/560:562, 1/A2/584:585 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
| IL_6GZZ_084 | 1/A2/562:564, 1/A2/581:584 | No text annotation | ||
| IL_6GZZ_085 | 1/A2/589:591, 1/A2/600:602 | Isolated non-canonical cWW pair | homologous IL_7A0S_011 IL_07785.1 | |
| IL_6GZZ_245 | 1/A2/629:636, 1/A2/644:651 | No text annotation | ||
| IL_6GZZ_086 | 1/A2/630:636, 1/A2/644:650 | No text annotation | ||
| IL_6GZZ_324 | 1/A2/720:740, 1/A2/820:858 | No text annotation | ||
| IL_6GZZ_087 | 1/A2/746:747, 1/A2/812:814 | Single bulged A | homologous IL_7A0S_016 IL_31462.6 | |
| IL_6GZZ_325 | 1/A2/787:790, 1/A2/805:807 | No text annotation | homologous IL_9DFE_020 IL_51387.2 | |
| IL_6GZZ_089 | 1/A2/790:792, 1/A2/804:805 | Single stack bend | geometric IL_4WF9_007 IL_90729.1 | |
| IL_6GZZ_090 | 1/A2/792:793, 1/A2/802:804 | Single stack bend | geometric IL_7RQB_005 NA | |
| IL_6GZZ_091 | 1/A2/886:889, 1/A2/986:989 | No text annotation | ||
| IL_6GZZ_092 | 1/A2/889:890, 1/A2/984:986 | Single stack bend | geometric IL_7A0S_005 IL_90729.1 | |
| IL_6GZZ_248 | 1/A2/893:899, 1/A2/975:981 | No text annotation | homologous IL_9DFE_024 IL_68243.1 | |
| IL_6GZZ_094 | 1/A2/907:911, 1/A2/963:967 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7RQB_027 NA | |
| IL_6GZZ_326 | 1/A2/907:918, 1/A2/956:967 | No text annotation | ||
| IL_6GZZ_095 | 1/A2/911:912, 1/A2/961:963 | Single bulged G | homologous IL_5J7L_271 IL_00225.13 | |
| IL_6GZZ_096 | 1/A2/913:919, 1/A2/955:960 | No text annotation | ||
| IL_6GZZ_097 | 1/A2/999:1002, 1/A2/1009:1012 | Tandem non-canonical cWW pairs | geometric IL_1MFQ_004 IL_85033.2 | |
| IL_6GZZ_098 | 1/A2/1042:1044, 1/A2/1207:1208 | Single bulged C | homologous IL_7A0S_032 IL_61258.15 | |
| IL_6GZZ_099 | 1/A2/1046:1050, 1/A2/1201:1205 | UAA/GAN | homologous IL_7A0S_033 IL_38507.2 | |
| IL_6GZZ_100 | 1/A2/1051:1059, 1/A2/1198:1200 | No text annotation | ||
| IL_6GZZ_101 | 1/A2/1059:1061, 1/A2/1197:1198 | Single bulged U | geometric IL_4V9F_039 IL_89505.4 | |
| IL_6GZZ_102 | 1/A2/1062:1064, 1/A2/1195:1196 | Single stack bend | geometric IL_4WF9_007 IL_90729.1 | |
| IL_6GZZ_103 | 1/A2/1064:1072, 1/A2/1187:1195 | No text annotation | ||
| IL_6GZZ_104 | 1/A2/1072:1078, 1/A2/1172:1187 | No text annotation | geometric IL_7RQB_040 NA | |
| IL_6GZZ_105 | 1/A2/1079:1082, 1/A2/1169:1171 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
| IL_6GZZ_106 | 1/A2/1090:1100, 1/A2/1155:1161 | No text annotation | ||
| IL_6GZZ_107 | 1/A2/1243:1245, 1/A2/1295:1298 | Isolated near basepair | geometric IL_4V88_406 NA | |
| IL_6GZZ_108 | 1/A2/1245:1248, 1/A2/1293:1295 | No text annotation | geometric IL_4N0T_004 IL_99358.1 | |
| IL_6GZZ_327 | 1/A2/1249:1253, 1/A2/1288:1292 | No text annotation | ||
| IL_6GZZ_110 | 1/A2/1255:1262, 1/A2/1282:1286 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_6GZZ_111 | 1/A2/1266:1268, 1/A2/1277:1278 | Single bulged A | homologous IL_7RQB_048 NA | |
| IL_6GZZ_252 | 1/A2/1346:1352, 1/A2/1672:1691 | No text annotation | ||
| IL_6GZZ_253 | 1/A2/1354:1357, 1/A2/1653:1670 | No text annotation | ||
| IL_6GZZ_254 | 1/A2/1459:1469, 1/A2/1626:1639 | No text annotation | ||
| IL_6GZZ_113 | 1/A2/1461:1469, 1/A2/1626:1637 | No text annotation | ||
| IL_6GZZ_255 | 1/A2/1481:1483, 1/A2/1606:1609 | No text annotation | homologous IL_7A0S_052 IL_14688.1 | |
| IL_6GZZ_115 | 1/A2/1485:1489, 1/A2/1599:1604 | No text annotation | ||
| IL_6GZZ_256 | 1/A2/1518:1522, 1/A2/1568:1571 | No text annotation | homologous IL_9DFE_059 IL_23774.1 | |
| IL_6GZZ_328 | 1/A2/1528:1531, 1/A2/1554:1562 | No text annotation | ||
| IL_6GZZ_118 | 1/A2/1700:1705, 1/A2/2028:2030 | No text annotation | homologous IL_5J7L_304 IL_12566.4 | |
| IL_6GZZ_119 | 1/A2/1712:1723, 1/A2/2014:2021 | No text annotation | ||
| IL_6GZZ_120 | 1/A2/1735:1740, 1/A2/1745:1751 | tSH-tSH-tHH-tHS | geometric IL_7RQB_068 NA | |
| IL_6GZZ_121 | 1/A2/1803:1805, 1/A2/2003:2006 | Isolated non-canonical cWW pair | geometric IL_5UNE_007 IL_87907.2 | |
| IL_6GZZ_258 | 1/A2/1831:1837, 1/A2/1846:1854 | No text annotation | homologous IL_9DFE_070 IL_17069.5 | |
| IL_6GZZ_259 | 1/A2/1869:1873, 1/A2/1926:1928 | No text annotation | ||
| IL_6GZZ_123 | 1/A2/1870:1874, 1/A2/1925:1927 | No text annotation | ||
| IL_6GZZ_124 | 1/A2/1874:1875, 1/A2/1922:1925 | Major groove intercalation | geometric IL_7A0S_067 IL_66635.5 | |
| IL_6GZZ_125 | 1/A2/1879:1884, 1/A2/1915:1918 | No text annotation | ||
| IL_6GZZ_126 | 1/A2/1884:1888, 1/A2/1911:1915 | UAA/GAN with extra pair | geometric IL_4WF9_073 IL_89021.2 | |
| IL_6GZZ_127 | 1/A2/1889:1893, 1/A2/1906:1910 | Triple sheared | homologous IL_4WF9_074 IL_66798.2 | |
| IL_6GZZ_128 | 1/A2/1957:1958, 1/A2/1988:1991 | Multiple bulged bases | geometric IL_1R3E_002 IL_84476.1 | |
| IL_6GZZ_129 | 1/A2/1958:1969, 1/A2/1985:1988 | No text annotation | homologous IL_4WF9_077 IL_42218.2 | |
| IL_6GZZ_130 | 1/A2/2074:2077, 1/A2/2630:2632 | No text annotation | geometric IL_6CZR_136 NA | |
| IL_6GZZ_330 | 1/A2/2091:2095, 1/A2/2452:2457 | No text annotation | ||
| IL_6GZZ_132 | 1/A2/2105:2107, 1/A2/2250:2253 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_6GZZ_331 | 1/A2/2105:2109, 1/A2/2249:2253 | No text annotation | ||
| IL_6GZZ_133 | 1/A2/2107:2109, 1/A2/2249:2250 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_6GZZ_134 | 1/A2/2109:2111, 1/A2/2246:2249 | No text annotation | geometric IL_4V87_185 NA | |
| IL_6GZZ_263 | 1/A2/2297:2314, 1/A2/2331:2339 | No text annotation | ||
| IL_6GZZ_135 | 1/A2/2314:2315, 1/A2/2329:2331 | Single stack bend | geometric IL_4WF9_007 IL_90729.1 | |
| IL_6GZZ_332 | 1/A2/2340:2342, 1/A2/2401:2403 | No text annotation | ||
| IL_6GZZ_137 | 1/A2/2364:2370, 1/A2/2376:2381 | No text annotation | ||
| IL_6GZZ_139 | 1/A2/2468:2470, 1/A2/2509:2512 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
| IL_6GZZ_140 | 1/A2/2471:2477, 1/A2/2501:2508 | No text annotation | ||
| IL_6GZZ_141 | 1/A2/2524:2527, 1/A2/2585:2592 | No text annotation | ||
| IL_6GZZ_333 | 1/A2/2536:2539, 1/A2/2552:2557 | No text annotation | ||
| IL_6GZZ_334 | 1/A2/2605:2606, 1/A2/2615:2617 | Single bulged A | geometric IL_8VFS_004 IL_31462.6 | |
| IL_6GZZ_144 | 1/A2/2650:2655, 1/A2/2788:2797 | No text annotation | ||
| IL_6GZZ_145 | 1/A2/2666:2672, 1/A2/2677:2682 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_7A0S_094 IL_16458.4 | |
| IL_6GZZ_335 | 1/A2/2694:2698, 1/A2/2740:2742 | C-loop | homologous IL_5J7L_347 IL_63596.11 | |
| IL_6GZZ_336 | 1/A2/2700:2705, 1/A2/2733:2738 | No text annotation | ||
| IL_6GZZ_148 | 1/A2/2709:2710, 1/A2/2725:2729 | Multiple bulged bases | homologous IL_7A0S_097 IL_42626.2 | |
| IL_6GZZ_337 | 1/A2/2752:2757, 1/A2/2777:2782 | UAA/GAN with extra cWW | homologous IL_5J7L_350 IL_49767.8 | |
| IL_6GZZ_150 | 1/A2/2804:2823, 1/A2/2901:2905 | No text annotation | ||
| IL_6GZZ_338 | 1/A2/2850:2853, 1/A2/2889:2892 | No text annotation | ||
| IL_6GZZ_152 | 1/A2/2853:2854, 1/A2/2887:2889 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_6GZZ_153 | 1/A2/2854:2857, 1/A2/2883:2887 | No text annotation | ||
| IL_6GZZ_270 | 1/A2/2854:2866, 1/A2/2875:2887 | No text annotation | ||
| IL_6GZZ_154 | 1/A2/2857:2865, 1/A2/2876:2883 | No text annotation | ||
| IL_6GZZ_339 | 1/A3/27:32, 1/A3/535:539 | No text annotation | geometric IL_8P9A_349 IL_49751.4 | |
| IL_6GZZ_271 | 1/A3/40:46, 1/A3/390:397 | No text annotation | ||
| IL_6GZZ_156 | 1/A3/43:46, 1/A3/390:394 | Tandem non-canonical cWW pairs | geometric IL_4V88_429 NA | |
| IL_6GZZ_340 | 1/A3/54:57, 1/A3/350:352 | No text annotation | ||
| IL_6GZZ_341 | 1/A3/63:66, 1/A3/96:97 | Multiple bulged bases | homologous IL_4LFB_005 IL_82107.4 | |
| IL_6GZZ_272 | 1/A3/122:125, 1/A3/226:227 | Multiple bulged bases | homologous IL_6CZR_119 NA | |
| IL_6GZZ_160 | 1/A3/126:133, 1/A3/219:225 | No text annotation | ||
| IL_6GZZ_342 | 1/A3/141:149, 1/A3/160:169 | No text annotation | ||
| IL_6GZZ_161 | 1/A3/180:182, 1/A3/195:197 | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_87907.2 | |
| IL_6GZZ_343 | 1/A3/237:248, 1/A3/268:279 | No text annotation | ||
| IL_6GZZ_162 | 1/A3/287:290, 1/A3/297:303 | No text annotation | ||
| IL_6GZZ_163 | 1/A3/366:370, 1/A3/384:385 | C-loop | geometric IL_4LFB_015 IL_03109.3 | |
| IL_6GZZ_276 | 1/A3/366:371, 1/A3/382:385 | C-loop with extra cWW pair | geometric IL_4V88_408 NA | |
| IL_6GZZ_164 | 1/A3/370:371, 1/A3/382:384 | Single bulged G | homologous IL_5J7L_019 IL_00225.13 | |
| IL_6GZZ_165 | 1/A3/404:412, 1/A3/420:428 | No text annotation | ||
| IL_6GZZ_277 | 1/A3/404:413, 1/A3/420:428 | No text annotation | ||
| IL_6GZZ_278 | 1/A3/439:450, 1/A3/460:473 | No text annotation | ||
| IL_6GZZ_279 | 1/A3/483:494, 1/A3/523:528 | No text annotation | ||
| IL_6GZZ_166 | 1/A3/487:494, 1/A3/523:524 | SSU/LSU pseudoknot | homologous IL_6CZR_132 NA | |
| IL_6GZZ_167 | 1/A3/498:504, 1/A3/511:519 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_6GZZ_168 | 1/A3/552:558, 1/A3/857:858 | No text annotation | homologous IL_6CZR_134 NA | |
| IL_6GZZ_169 | 1/A3/560:567, 1/A3/740:747 | No text annotation | ||
| IL_6GZZ_170 | 1/A3/571:580, 1/A3/626:634 | No text annotation | ||
| IL_6GZZ_281 | 1/A3/571:582, 1/A3/622:634 | No text annotation | ||
| IL_6GZZ_171 | 1/A3/580:582, 1/A3/622:626 | 8-nt loop receptor | geometric IL_6DME_002 IL_36516.3 | |
| IL_6GZZ_344 | 1/A3/584:595, 1/A3/611:620 | No text annotation | ||
| IL_6GZZ_172 | 1/A3/587:596, 1/A3/610:617 | tSH-tHW-tHH-tHS | homologous IL_6CZR_138 NA | |
| IL_6GZZ_173 | 1/A3/637:638, 1/A3/734:737 | Major groove platform; stack outside cWW | homologous IL_5J7L_031 IL_50694.7 | |
| IL_6GZZ_283 | 1/A3/638:651, 1/A3/721:734 | No text annotation | ||
| IL_6GZZ_174 | 1/A3/654:663, 1/A3/693:718 | No text annotation | ||
| IL_6GZZ_284 | 1/A3/757:761, 1/A3/787:788 | Left turn | homologous IL_5J7L_036 IL_29346.2 | |
| IL_6GZZ_345 | 1/A3/762:766, 1/A3/782:786 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_17136.7 | |
| IL_6GZZ_346 | 1/A3/862:871, 1/A3/882:889 | No text annotation | ||
| IL_6GZZ_177 | 1/A3/864:871, 1/A3/882:887 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_41756.4 | |
| IL_6GZZ_178 | 1/A3/899:900, 1/A3/1375:1377 | Single bulged A | homologous IL_6CZR_147 NA | |
| IL_6GZZ_179 | 1/A3/900:905, 1/A3/1371:1375 | No text annotation | ||
| IL_6GZZ_180 | 1/A3/1042:1043, 1/A3/1176:1178 | Single bulged U | homologous IL_4LFB_046 IL_89505.4 | |
| IL_6GZZ_181 | 1/A3/1043:1045, 1/A3/1174:1176 | Isolated non-canonical cWW pair | homologous IL_5J7L_050 IL_28037.2 | |
| IL_6GZZ_286 | 1/A3/1226:1236, 1/A3/1263:1273 | No text annotation | ||
| IL_6GZZ_287 | 1/A3/1236:1245, 1/A3/1252:1263 | No text annotation | ||
| IL_6GZZ_183 | 1/A3/1284:1291, 1/A3/1308:1315 | No text annotation | ||
| IL_6GZZ_184 | 1/A3/1381:1383, 1/A3/1478:1481 | No text annotation | homologous IL_4LFB_056 IL_61438.4 | |
| IL_6GZZ_185 | 1/A3/1383:1386, 1/A3/1474:1478 | No text annotation | geometric IL_8CRE_467 IL_65718.4 | |
| IL_6GZZ_186 | 1/A3/1386:1391, 1/A3/1468:1474 | No text annotation | homologous IL_6CZR_369 NA | |
| IL_6GZZ_347 | 1/A3/1394:1405, 1/A3/1454:1465 | No text annotation | ||
| IL_6GZZ_187 | 1/A3/1413:1417, 1/A3/1443:1446 | UAA/GAN related | geometric IL_3FS0_001 IL_77691.5 | |
| IL_6GZZ_188 | 1/A3/1417:1421, 1/A3/1439:1443 | Triple non-canonical cWW pairs | geometric IL_5BTM_001 IL_49751.4 | |
| IL_6GZZ_348 | 1/A4/27:32, 1/A4/535:539 | No text annotation | geometric IL_8P9A_349 IL_49751.4 | |
| IL_6GZZ_189 | 1/A4/28:33, 1/A4/534:538 | No text annotation | geometric IL_5TBW_121 NA | |
| IL_6GZZ_290 | 1/A4/40:46, 1/A4/390:397 | No text annotation | ||
| IL_6GZZ_190 | 1/A4/43:46, 1/A4/390:394 | Tandem non-canonical cWW pairs | geometric IL_4V88_429 NA | |
| IL_6GZZ_191 | 1/A4/47:53, 1/A4/353:356 | No text annotation | ||
| IL_6GZZ_192 | 1/A4/62:67, 1/A4/95:98 | Tandem non-canonical cWW pairs | geometric IL_7A0S_040 IL_77658.1 | |
| IL_6GZZ_193 | 1/A4/122:131, 1/A4/222:227 | No text annotation | ||
| IL_6GZZ_194 | 1/A4/131:133, 1/A4/219:222 | No text annotation | geometric IL_4V87_185 NA | |
| IL_6GZZ_349 | 1/A4/141:152, 1/A4/157:169 | No text annotation | ||
| IL_6GZZ_195 | 1/A4/180:182, 1/A4/195:197 | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_87907.2 | |
| IL_6GZZ_292 | 1/A4/237:249, 1/A4/267:279 | No text annotation | ||
| IL_6GZZ_196 | 1/A4/287:290, 1/A4/297:303 | No text annotation | ||
| IL_6GZZ_197 | 1/A4/366:371, 1/A4/382:385 | C-loop with extra cWW pair | geometric IL_4V88_408 NA | |
| IL_6GZZ_350 | 1/A4/402:412, 1/A4/420:430 | No text annotation | ||
| IL_6GZZ_294 | 1/A4/440:450, 1/A4/460:472 | No text annotation | ||
| IL_6GZZ_198 | 1/A4/487:494, 1/A4/523:524 | SSU/LSU pseudoknot | homologous IL_6CZR_132 NA | |
| IL_6GZZ_199 | 1/A4/498:504, 1/A4/511:519 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_6GZZ_200 | 1/A4/552:558, 1/A4/857:858 | No text annotation | homologous IL_6CZR_134 NA | |
| IL_6GZZ_201 | 1/A4/560:567, 1/A4/740:747 | No text annotation | ||
| IL_6GZZ_202 | 1/A4/571:574, 1/A4/632:634 | No text annotation | geometric IL_4V87_185 NA | |
| IL_6GZZ_351 | 1/A4/574:582, 1/A4/622:632 | No text annotation | ||
| IL_6GZZ_352 | 1/A4/586:595, 1/A4/611:618 | No text annotation | ||
| IL_6GZZ_203 | 1/A4/637:638, 1/A4/734:737 | Major groove platform; stack outside cWW | geometric IL_1KUQ_001 IL_50694.7 | |
| IL_6GZZ_297 | 1/A4/638:651, 1/A4/721:734 | No text annotation | ||
| IL_6GZZ_204 | 1/A4/654:657, 1/A4/700:718 | No text annotation | ||
| IL_6GZZ_205 | 1/A4/657:663, 1/A4/693:700 | No text annotation | homologous IL_6CZR_363 NA | |
| IL_6GZZ_299 | 1/A4/753:761, 1/A4/787:792 | No text annotation | ||
| IL_6GZZ_206 | 1/A4/757:762, 1/A4/786:788 | Other IL | geometric IL_4V88_435 NA | |
| IL_6GZZ_207 | 1/A4/762:766, 1/A4/782:786 | tSH-tHW-tHS | geometric IL_4LFB_033 IL_17136.7 | |
| IL_6GZZ_353 | 1/A4/862:873, 1/A4/880:889 | No text annotation | ||
| IL_6GZZ_208 | 1/A4/864:872, 1/A4/881:887 | 9x7 Sarcin-Ricin with inserted C; G-bulge | homologous IL_6CZR_146 NA | |
| IL_6GZZ_209 | 1/A4/899:900, 1/A4/1375:1377 | Single bulged A | geometric IL_6CZR_147 NA | |
| IL_6GZZ_210 | 1/A4/900:905, 1/A4/1371:1375 | No text annotation | ||
| IL_6GZZ_211 | 1/A4/1039:1042, 1/A4/1178:1184 | No text annotation | ||
| IL_6GZZ_212 | 1/A4/1042:1043, 1/A4/1176:1178 | Single bulged U | homologous IL_4LFB_046 IL_89505.4 | |
| IL_6GZZ_302 | 1/A4/1226:1243, 1/A4/1254:1273 | No text annotation | ||
| IL_6GZZ_213 | 1/A4/1236:1243, 1/A4/1254:1263 | No text annotation | ||
| IL_6GZZ_214 | 1/A4/1381:1383, 1/A4/1478:1481 | No text annotation | homologous IL_4LFB_056 IL_61438.4 | |
| IL_6GZZ_215 | 1/A4/1383:1391, 1/A4/1468:1478 | No text annotation | ||
| IL_6GZZ_354 | 1/A4/1394:1405, 1/A4/1454:1465 | No text annotation | ||
| IL_6GZZ_355 | 1/A4/1413:1420, 1/A4/1440:1446 | No text annotation | ||
| IL_6GZZ_356 | 1/A4/1422:1428, 1/A4/1435:1438 | No text annotation | ||
| IL_6GZZ_217 | 1/B1/19:23, 1/B1/64:69 | No text annotation | ||
| IL_6GZZ_218 | 1/B2/19:23, 1/B2/64:69 | No text annotation | ||
| IL_6GZZ_219 | 1/B2/72:81, 1/B2/100:109 | No text annotation | ||
| IL_6GZZ_306 | 1/B2/72:88, 1/B2/93:109 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6GZZ_002 | No text annotation | ||
| IL_6GZZ_220 | No text annotation | ||
| IL_6GZZ_012 | No text annotation | ||
| IL_6GZZ_221 | No text annotation | ||
| IL_6GZZ_015 | No text annotation | ||
| IL_6GZZ_017 | No text annotation | ||
| IL_6GZZ_222 | No text annotation | ||
| IL_6GZZ_225 | No text annotation | ||
| IL_6GZZ_226 | No text annotation | ||
| IL_6GZZ_036 | Tandem non-canonical cWW pairs | ||
| IL_6GZZ_228 | No text annotation | ||
| IL_6GZZ_043 | No text annotation | ||
| IL_6GZZ_044 | No text annotation | ||
| IL_6GZZ_229 | No text annotation | ||
| IL_6GZZ_049 | No text annotation | ||
| IL_6GZZ_230 | No text annotation | ||
| IL_6GZZ_231 | No text annotation | ||
| IL_6GZZ_063 | No text annotation | ||
| IL_6GZZ_235 | No text annotation | ||
| IL_6GZZ_066 | Other IL | ||
| IL_6GZZ_236 | No text annotation | ||
| IL_6GZZ_237 | C-loop with extra cWW pair | ||
| IL_6GZZ_068 | No text annotation | ||
| IL_6GZZ_069 | No text annotation | ||
| IL_6GZZ_238 | No text annotation | ||
| IL_6GZZ_239 | No text annotation | ||
| IL_6GZZ_240 | No text annotation | ||
| IL_6GZZ_078 | Kink-turn related | ||
| IL_6GZZ_079 | No text annotation | ||
| IL_6GZZ_246 | No text annotation | ||
| IL_6GZZ_088 | No text annotation | ||
| IL_6GZZ_247 | No text annotation | ||
| IL_6GZZ_093 | No text annotation | ||
| IL_6GZZ_249 | No text annotation | ||
| IL_6GZZ_109 | No text annotation | ||
| IL_6GZZ_250 | No text annotation | ||
| IL_6GZZ_251 | No text annotation | ||
| IL_6GZZ_112 | Tandem non-canonical cWW pairs | ||
| IL_6GZZ_114 | No text annotation | ||
| IL_6GZZ_116 | No text annotation | ||
| IL_6GZZ_117 | No text annotation | ||
| IL_6GZZ_329 | No text annotation | ||
| IL_6GZZ_257 | No text annotation | ||
| IL_6GZZ_122 | No text annotation | ||
| IL_6GZZ_131 | Tandem non-canonical cWW pairs with near WC pairs | ||
| IL_6GZZ_260 | No text annotation | ||
| IL_6GZZ_261 | No text annotation | ||
| IL_6GZZ_262 | No text annotation | ||
| IL_6GZZ_136 | No text annotation | ||
| IL_6GZZ_264 | No text annotation | ||
| IL_6GZZ_138 | No text annotation | ||
| IL_6GZZ_142 | No text annotation | ||
| IL_6GZZ_265 | No text annotation | ||
| IL_6GZZ_143 | Other IL | ||
| IL_6GZZ_266 | No text annotation | ||
| IL_6GZZ_146 | No text annotation | ||
| IL_6GZZ_147 | No text annotation | ||
| IL_6GZZ_267 | No text annotation | ||
| IL_6GZZ_268 | No text annotation | ||
| IL_6GZZ_149 | No text annotation | ||
| IL_6GZZ_269 | No text annotation | ||
| IL_6GZZ_151 | No text annotation | ||
| IL_6GZZ_155 | No text annotation | ||
| IL_6GZZ_157 | No text annotation | ||
| IL_6GZZ_158 | Tandem non-canonical cWW pairs | ||
| IL_6GZZ_159 | Isolated non-canonical cWW pair | ||
| IL_6GZZ_273 | No text annotation | ||
| IL_6GZZ_274 | Isolated non-canonical cWW pair | ||
| IL_6GZZ_275 | No text annotation | ||
| IL_6GZZ_280 | No text annotation | ||
| IL_6GZZ_282 | No text annotation | ||
| IL_6GZZ_175 | Other IL | ||
| IL_6GZZ_176 | tSH-tHW-tHS-cWW | ||
| IL_6GZZ_285 | No text annotation | ||
| IL_6GZZ_182 | No text annotation | ||
| IL_6GZZ_288 | No text annotation | ||
| IL_6GZZ_289 | No text annotation | ||
| IL_6GZZ_291 | No text annotation | ||
| IL_6GZZ_293 | No text annotation | ||
| IL_6GZZ_295 | No text annotation | ||
| IL_6GZZ_296 | No text annotation | ||
| IL_6GZZ_298 | No text annotation | ||
| IL_6GZZ_300 | tSH-tHW-tHS-cWW | ||
| IL_6GZZ_301 | No text annotation | ||
| IL_6GZZ_303 | No text annotation | ||
| IL_6GZZ_216 | No text annotation | ||
| IL_6GZZ_304 | No text annotation | ||
| IL_6GZZ_305 | Isolated cWH basepair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6GZZ_057 | 1/A1/24:31, 1/A1/502:513, 1/A1/523:543 | No text annotation | ||
| J3_6GZZ_058 | 1/A1/32:38, 1/A1/469:489, 1/A1/496:501 | No text annotation | ||
| J3_6GZZ_030 | 1/A1/54:56, 1/A1/69:76, 1/A1/107:113 | No text annotation | ||
| J3_6GZZ_002 | 1/A1/259:263, 1/A1/283:291, 1/A1/396:398 | No text annotation | homologous J3_4WF9_014 NA | |
| J3_6GZZ_031 | 1/A1/322:326, 1/A1/341:350, 1/A1/362:366 | No text annotation | homologous J3_9DFE_006 J3_46299.2 | |
| J3_6GZZ_003 | 1/A1/730:738, 1/A1/822:824, 1/A1/840:845 | No text annotation | ||
| J3_6GZZ_059 | 1/A1/747:756, 1/A1/773:785, 1/A1/809:812 | No text annotation | ||
| J3_6GZZ_004 | 1/A1/1346:1354, 1/A1/1670:1676, 1/A1/1687:1691 | No text annotation | ||
| J3_6GZZ_033 | 1/A1/1354:1357, 1/A1/1653:1660, 1/A1/1668:1670 | No text annotation | ||
| J3_6GZZ_060 | 1/A1/1358:1362, 1/A1/1386:1393, 1/A1/1649:1652 | No text annotation | ||
| J3_6GZZ_061 | 1/A1/1459:1477, 1/A1/1613:1614, 1/A1/1617:1639 | No text annotation | ||
| J3_6GZZ_062 | 1/A1/1492:1494, 1/A1/1515:1517, 1/A1/1572:1596 | No text annotation | ||
| J3_6GZZ_063 | 1/A1/1803:1825, 1/A1/1860:1863, 1/A1/1999:2006 | No text annotation | ||
| J3_6GZZ_006 | 1/A1/2113:2117, 1/A1/2220:2224, 1/A1/2237:2244 | No text annotation | ||
| J3_6GZZ_007 | 1/A1/2531:2534, 1/A1/2559:2561, 1/A1/2575:2581 | No text annotation | ||
| J3_6GZZ_008 | 1/A1/2826:2828, 1/A1/2842:2848, 1/A1/2894:2898 | No text annotation | ||
| J3_6GZZ_039 | 1/A2/24:31, 1/A2/502:513, 1/A2/522:543 | No text annotation | ||
| J3_6GZZ_040 | 1/A2/31:35, 1/A2/473:489, 1/A2/496:502 | No text annotation | homologous J3_4WF9_012 J3_30040.2 | |
| J3_6GZZ_009 | 1/A2/54:57, 1/A2/68:76, 1/A2/107:113 | No text annotation | ||
| J3_6GZZ_010 | 1/A2/732:740, 1/A2/820:827, 1/A2/835:843 | No text annotation | ||
| J3_6GZZ_064 | 1/A2/747:756, 1/A2/773:785, 1/A2/809:812 | No text annotation | ||
| J3_6GZZ_011 | 1/A2/1346:1352, 1/A2/1672:1676, 1/A2/1687:1691 | No text annotation | ||
| J3_6GZZ_012 | 1/A2/1354:1357, 1/A2/1653:1659, 1/A2/1668:1670 | No text annotation | homologous J3_5J7L_042 J3_19545.2 | |
| J3_6GZZ_042 | 1/A2/1358:1362, 1/A2/1386:1393, 1/A2/1649:1652 | No text annotation | ||
| J3_6GZZ_065 | 1/A2/1469:1477, 1/A2/1613:1614, 1/A2/1617:1626 | No text annotation | ||
| J3_6GZZ_044 | 1/A2/1492:1494, 1/A2/1515:1517, 1/A2/1572:1596 | No text annotation | ||
| J3_6GZZ_066 | 1/A2/1803:1825, 1/A2/1860:1863, 1/A2/1999:2006 | No text annotation | ||
| J3_6GZZ_014 | 1/A2/1865:1868, 1/A2/1929:1957, 1/A2/1991:1997 | No text annotation | ||
| J3_6GZZ_067 | 1/A2/1866:1868, 1/A2/1929:1969, 1/A2/1985:1996 | No text annotation | ||
| J3_6GZZ_015 | 1/A2/2113:2117, 1/A2/2220:2224, 1/A2/2237:2244 | No text annotation | ||
| J3_6GZZ_047 | 1/A2/2344:2370, 1/A2/2376:2386, 1/A2/2395:2399 | No text annotation | ||
| J3_6GZZ_016 | 1/A2/2531:2534, 1/A2/2559:2563, 1/A2/2573:2581 | No text annotation | ||
| J3_6GZZ_017 | 1/A2/2826:2828, 1/A2/2842:2848, 1/A2/2894:2898 | No text annotation | ||
| J3_6GZZ_049 | 1/A3/46:53, 1/A3/353:365, 1/A3/386:390 | No text annotation | ||
| J3_6GZZ_019 | 1/A3/569:571, 1/A3/634:637, 1/A3/737:738 | No text annotation | geometric J3_4LFB_011 J3_56052.5 | |
| J3_6GZZ_050 | 1/A3/569:571, 1/A3/634:638, 1/A3/734:738 | No text annotation | homologous J3_4LFB_015 J3_17385.4 | |
| J3_6GZZ_020 | 1/A3/808:812, 1/A3/834:838, 1/A3/845:852 | No text annotation | ||
| J3_6GZZ_068 | 1/A3/908:916, 1/A3/1325:1331, 1/A3/1354:1368 | No text annotation | ||
| J3_6GZZ_069 | 1/A3/1045:1054, 1/A3/1085:1143, 1/A3/1156:1174 | No text annotation | ||
| J3_6GZZ_021 | 1/A3/1055:1056, 1/A3/1065:1069, 1/A3/1080:1084 | No text annotation | homologous J3_5J7L_009 J3_76043.3 | |
| J3_6GZZ_022 | 1/A4/46:47, 1/A4/356:365, 1/A4/386:390 | No text annotation | ||
| J3_6GZZ_023 | 1/A4/133:139, 1/A4/171:177, 1/A4/200:219 | No text annotation | ||
| J3_6GZZ_024 | 1/A4/569:571, 1/A4/634:637, 1/A4/737:738 | No text annotation | geometric J3_5J7L_002 J3_56052.5 | |
| J3_6GZZ_053 | 1/A4/569:571, 1/A4/634:638, 1/A4/734:738 | No text annotation | homologous J3_4LFB_015 J3_17385.4 | |
| J3_6GZZ_025 | 1/A4/808:813, 1/A4/833:838, 1/A4/845:852 | No text annotation | ||
| J3_6GZZ_070 | 1/A4/908:916, 1/A4/1325:1331, 1/A4/1354:1368 | No text annotation | ||
| J3_6GZZ_026 | 1/A4/1055:1056, 1/A4/1065:1069, 1/A4/1080:1084 | No text annotation | homologous J3_5J7L_009 J3_76043.3 | |
| J3_6GZZ_055 | 1/B1/13:18, 1/B1/70:71, 1/B1/110:112 | No text annotation | homologous J3_9DFE_020 J3_12003.2 | |
| J3_6GZZ_056 | 1/B2/8:18, 1/B2/70:71, 1/B2/110:117 | No text annotation | ||
| J4_6GZZ_001 | 1/A1/626:636, 1/A1/644:655, 1/A1/662:666, 1/A1/676:705 | No text annotation | ||
| J4_6GZZ_002 | 1/A1/1395:1405, 1/A1/1422:1433, 1/A1/1450:1457, 1/A1/1641:1647 | No text annotation | ||
| J4_6GZZ_020 | 1/A1/1866:1868, 1/A1/1929:1933, 1/A1/1945:1969, 1/A1/1985:1996 | No text annotation | ||
| J4_6GZZ_004 | 1/A1/2657:2663, 1/A1/2685:2690, 1/A1/2746:2751, 1/A1/2783:2786 | No text annotation | ||
| J4_6GZZ_021 | 1/A2/318:326, 1/A2/341:344, 1/A2/348:350, 1/A2/362:372 | No text annotation | ||
| J4_6GZZ_022 | 1/A2/624:629, 1/A2/651:655, 1/A2/662:666, 1/A2/676:707 | No text annotation | ||
| J4_6GZZ_007 | 1/A2/1396:1405, 1/A2/1422:1433, 1/A2/1450:1457, 1/A2/1641:1646 | No text annotation | ||
| J4_6GZZ_023 | 1/A2/2657:2663, 1/A2/2685:2690, 1/A2/2746:2750, 1/A2/2784:2786 | No text annotation | ||
| J4_6GZZ_009 | 1/A3/58:61, 1/A3/99:108, 1/A3/307:311, 1/A3/332:349 | No text annotation | ||
| J4_6GZZ_010 | 1/A3/108:120, 1/A3/229:236, 1/A3/280:285, 1/A3/305:307 | No text annotation | ||
| J4_6GZZ_011 | 1/A3/133:139, 1/A3/171:177, 1/A3/200:204, 1/A3/213:219 | No text annotation | ||
| J4_6GZZ_024 | 1/A3/558:560, 1/A3/747:752, 1/A3/793:805, 1/A3/855:857 | No text annotation | ||
| J4_6GZZ_013 | 1/A3/916:925, 1/A3/1214:1223, 1/A3/1276:1284, 1/A3/1315:1325 | No text annotation | ||
| J4_6GZZ_014 | 1/A3/930:939, 1/A3/950:988, 1/A3/997:1042, 1/A3/1178:1209 | No text annotation | ||
| J4_6GZZ_015 | 1/A4/108:120, 1/A4/229:236, 1/A4/280:285, 1/A4/305:307 | No text annotation | ||
| J4_6GZZ_025 | 1/A4/558:560, 1/A4/747:752, 1/A4/793:805, 1/A4/855:857 | No text annotation | ||
| J4_6GZZ_017 | 1/A4/916:925, 1/A4/1214:1222, 1/A4/1277:1291, 1/A4/1308:1325 | No text annotation | ||
| J4_6GZZ_018 | 1/A4/930:939, 1/A4/950:988, 1/A4/997:1043, 1/A4/1176:1209 | No text annotation | ||
| J4_6GZZ_026 | 1/A4/1043:1050, 1/A4/1089:1100, 1/A4/1137:1143, 1/A4/1156:1176 | No text annotation | ||
| J5_6GZZ_008 | 1/A1/1712:1732, 1/A1/1754:1757, 1/A1/1783:1785, 1/A1/1789:1797, 1/A1/2012:2021 | No text annotation | ||
| J5_6GZZ_009 | 1/A1/2074:2090, 1/A1/2458:2470, 1/A1/2509:2527, 1/A1/2585:2602, 1/A1/2620:2632 | No text annotation | ||
| J5_6GZZ_010 | 1/A2/1712:1732, 1/A2/1754:1757, 1/A2/1783:1785, 1/A2/1789:1797, 1/A2/2012:2021 | No text annotation | ||
| J5_6GZZ_011 | 1/A2/2074:2089, 1/A2/2459:2470, 1/A2/2509:2527, 1/A2/2585:2602, 1/A2/2620:2632 | No text annotation | ||
| J5_6GZZ_012 | 1/A3/36:39, 1/A3/398:404, 1/A3/428:436, 1/A3/476:483, 1/A3/528:531 | No text annotation | ||
| J5_6GZZ_006 | 1/A4/36:39, 1/A4/398:401, 1/A4/431:437, 1/A4/475:483, 1/A4/528:531 | No text annotation | homologous J5_6CZR_007 NA | |
| J5_6GZZ_007 | 1/A4/47:61, 1/A4/99:108, 1/A4/307:311, 1/A4/332:334, 1/A4/345:356 | No text annotation | ||
| J7_6GZZ_005 | 1/A1/866:871, 1/A1/884:885, 1/A1/990:993, 1/A1/1018:1024, 1/A1/1035:1041, 1/A1/1209:1216, 1/A1/1228:1237 | No text annotation | ||
| J7_6GZZ_002 | 1/A1/2091:2109, 1/A1/2249:2260, 1/A1/2272:2273, 1/A1/2295:2297, 1/A1/2339:2340, 1/A1/2403:2409, 1/A1/2435:2457 | No text annotation | ||
| J7_6GZZ_006 | 1/A2/864:871, 1/A2/884:885, 1/A2/990:993, 1/A2/1018:1024, 1/A2/1035:1040, 1/A2/1210:1217, 1/A2/1227:1239 | No text annotation | ||
| J7_6GZZ_007 | 1/A2/2098:2101, 1/A2/2257:2260, 1/A2/2272:2273, 1/A2/2295:2297, 1/A2/2339:2340, 1/A2/2403:2409, 1/A2/2435:2449 | No text annotation | ||
| J10_6GZZ_001 | 1/A1/558:562, 1/A1/584:591, 1/A1/600:624, 1/A1/708:728, 1/A1/847:861, 1/A1/1242:1243, 1/A1/1298:1324, 1/A1/1342:1343, 1/A1/1694:1697, 1/A1/2033:2042 | No text annotation | ||
| J10_6GZZ_002 | 1/A2/558:560, 1/A2/585:591, 1/A2/600:614, 1/A2/717:720, 1/A2/858:861, 1/A2/1242:1248, 1/A2/1293:1324, 1/A2/1342:1343, 1/A2/1694:1699, 1/A2/2031:2042 | No text annotation | ||
| J12_6GZZ_003 | 1/A1/39:53, 1/A1/114:120, 1/A1/127:130, 1/A1/147:152, 1/A1/164:175, 1/A1/201:214, 1/A1/221:229, 1/A1/248:266, 1/A1/280:295, 1/A1/391:406, 1/A1/425:436, 1/A1/448:468 | No text annotation | ||
| J12_6GZZ_004 | 1/A2/39:53, 1/A2/114:120, 1/A2/127:130, 1/A2/147:151, 1/A2/165:175, 1/A2/201:214, 1/A2/221:229, 1/A2/248:266, 1/A2/280:290, 1/A2/397:404, 1/A2/427:435, 1/A2/449:468 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6GZZ_028 | No text annotation | ||
| J3_6GZZ_029 | No text annotation | ||
| J3_6GZZ_001 | No text annotation | ||
| J3_6GZZ_032 | No text annotation | ||
| J3_6GZZ_034 | No text annotation | ||
| J3_6GZZ_035 | No text annotation | ||
| J3_6GZZ_005 | No text annotation | ||
| J3_6GZZ_036 | No text annotation | ||
| J3_6GZZ_037 | No text annotation | ||
| J3_6GZZ_038 | No text annotation | ||
| J3_6GZZ_041 | No text annotation | ||
| J3_6GZZ_043 | No text annotation | ||
| J3_6GZZ_013 | No text annotation | ||
| J3_6GZZ_045 | No text annotation | ||
| J3_6GZZ_046 | No text annotation | ||
| J3_6GZZ_048 | No text annotation | ||
| J3_6GZZ_018 | No text annotation | ||
| J3_6GZZ_051 | No text annotation | ||
| J3_6GZZ_052 | No text annotation | ||
| J3_6GZZ_054 | No text annotation | ||
| J3_6GZZ_027 | No text annotation | ||
| J4_6GZZ_003 | No text annotation | ||
| J4_6GZZ_005 | No text annotation | ||
| J4_6GZZ_006 | No text annotation | ||
| J4_6GZZ_008 | No text annotation | ||
| J4_6GZZ_012 | No text annotation | ||
| J4_6GZZ_016 | No text annotation | ||
| J4_6GZZ_019 | No text annotation | ||
| J5_6GZZ_001 | No text annotation | ||
| J5_6GZZ_002 | No text annotation | ||
| J5_6GZZ_003 | No text annotation | ||
| J5_6GZZ_004 | No text annotation | ||
| J5_6GZZ_005 | No text annotation | ||
| J7_6GZZ_001 | No text annotation | ||
| J7_6GZZ_003 | No text annotation | ||
| J7_6GZZ_004 | No text annotation | ||
| J12_6GZZ_001 | No text annotation | ||
| J12_6GZZ_002 | No text annotation |
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