HL_6GZZ_012

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GUUCGUGGAGC

Length

11 nucleotides

Bulged bases

6GZZ|1|A1|G|414

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZZ_012 not in the Motif Atlas

Homologous match to HL_7RQB_013

Geometric discrepancy: 0.3504

The information below is about HL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6GZZ|1|A1|G|410
6GZZ|1|A1|U|411
6GZZ|1|A1|U|412
6GZZ|1|A1|C|413
6GZZ|1|A1|G|414
6GZZ|1|A1|U|415
6GZZ|1|A1|G|416
6GZZ|1|A1|G|417
6GZZ|1|A1|A|418
6GZZ|1|A1|G|419
6GZZ|1|A1|C|420

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain K1

50S ribosomal protein L15

Chain W1

50S ribosomal protein L28