HL_6GZZ_014

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CCGUGAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZZ_014 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3675

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6GZZ|1|A1|C|489
6GZZ|1|A1|C|490
6GZZ|1|A1|G|491
6GZZ|1|A1|U|492
6GZZ|1|A1|G|493
6GZZ|1|A1|A|494
6GZZ|1|A1|G|495
6GZZ|1|A1|G|496

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain E1

50S ribosomal protein L4

Chain S1

50S ribosomal protein L23

Chain c1

50S ribosomal protein L34