HL_6GZZ_024

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CUUUAGGG

Length

8 nucleotides

Bulged bases

6GZZ|1|A1|U|876, 6GZZ|1|A1|G|879

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZZ_024 not in the Motif Atlas

Geometric match to HL_7KI3_001

Geometric discrepancy: 0.3853

The information below is about HL_7KI3_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6GZZ|1|A1|C|874
6GZZ|1|A1|U|875
6GZZ|1|A1|U|876
6GZZ|1|A1|U|877
6GZZ|1|A1|A|878
6GZZ|1|A1|G|879
6GZZ|1|A1|G|880
6GZZ|1|A1|G|881

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain K1

50S ribosomal protein L15

Chain V1

50S ribosomal protein L27