HL_6GZZ_030

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZZ_030 not in the Motif Atlas

Homologous match to HL_7RQB_032

Geometric discrepancy: 0.2544

The information below is about HL_7RQB_032

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

6GZZ|1|A1|C|1270
6GZZ|1|A1|G|1271
6GZZ|1|A1|C|1272
6GZZ|1|A1|G|1273
6GZZ|1|A1|A|1274
6GZZ|1|A1|G|1275

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain P1

50S ribosomal protein L20

Chain Q1

50S ribosomal protein L21