HL_6GZZ_048

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GGUGGGAGCCUGUGAACCCCCGCCUCCGGGUGGGGGGGAGGCGCCGGUGAAAUACCACC

Length

59 nucleotides

Bulged bases

6GZZ|1|A1|G|2148, 6GZZ|1|A1|U|2156, 6GZZ|1|A1|C|2163, 6GZZ|1|A1|C|2166, 6GZZ|1|A1|C|2167, 6GZZ|1|A1|G|2171, 6GZZ|1|A1|C|2185, 6GZZ|1|A1|G|2190, 6GZZ|1|A1|A|2195, 6GZZ|1|A1|U|2196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZZ|1|A1|G|2144
6GZZ|1|A1|G|2145
6GZZ|1|A1|U|2146
6GZZ|1|A1|G|2147
6GZZ|1|A1|G|2148
6GZZ|1|A1|G|2149
6GZZ|1|A1|A|2150
6GZZ|1|A1|G|2151
6GZZ|1|A1|C|2152
6GZZ|1|A1|C|2153
6GZZ|1|A1|U|2154
6GZZ|1|A1|G|2155
6GZZ|1|A1|U|2156
6GZZ|1|A1|G|2157
6GZZ|1|A1|A|2158
6GZZ|1|A1|A|2159
6GZZ|1|A1|C|2160
6GZZ|1|A1|C|2161
6GZZ|1|A1|C|2162
6GZZ|1|A1|C|2163
6GZZ|1|A1|C|2164
6GZZ|1|A1|G|2165
6GZZ|1|A1|C|2166
6GZZ|1|A1|C|2167
6GZZ|1|A1|U|2168
6GZZ|1|A1|C|2169
6GZZ|1|A1|C|2170
6GZZ|1|A1|G|2171
6GZZ|1|A1|G|2172
6GZZ|1|A1|G|2173
6GZZ|1|A1|U|2174
6GZZ|1|A1|G|2175
6GZZ|1|A1|G|2176
6GZZ|1|A1|G|2177
6GZZ|1|A1|G|2178
6GZZ|1|A1|G|2179
6GZZ|1|A1|G|2180
6GZZ|1|A1|G|2181
6GZZ|1|A1|A|2182
6GZZ|1|A1|G|2183
6GZZ|1|A1|G|2184
6GZZ|1|A1|C|2185
6GZZ|1|A1|G|2186
6GZZ|1|A1|C|2187
6GZZ|1|A1|C|2188
6GZZ|1|A1|G|2189
6GZZ|1|A1|G|2190
6GZZ|1|A1|U|2191
6GZZ|1|A1|G|2192
6GZZ|1|A1|A|2193
6GZZ|1|A1|A|2194
6GZZ|1|A1|A|2195
6GZZ|1|A1|U|2196
6GZZ|1|A1|A|2197
6GZZ|1|A1|C|2198
6GZZ|1|A1|C|2199
6GZZ|1|A1|A|2200
6GZZ|1|A1|C|2201
6GZZ|1|A1|C|2202

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain J4

30S ribosomal protein S10