HL_6GZZ_049

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CGGAUG

Length

6 nucleotides

Bulged bases

6GZZ|1|A1|G|2229, 6GZZ|1|A1|U|2232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZZ_049 not in the Motif Atlas

Geometric match to HL_4TUW_002

Geometric discrepancy: 0.2709

The information below is about HL_4TUW_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_56334.1

Basepair signature

cWW-F

Number of instances in this motif group

16

Unit IDs

6GZZ|1|A1|C|2228
6GZZ|1|A1|G|2229
6GZZ|1|A1|G|2230
6GZZ|1|A1|A|2231
6GZZ|1|A1|U|2232
6GZZ|1|A1|G|2233

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain C1

50S ribosomal protein L2

Chain H1

50S ribosomal protein L9

Chain W1

50S ribosomal protein L28