HL_6GZZ_050

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

6GZZ|1|A1|G|2264

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZZ_050 not in the Motif Atlas

Homologous match to HL_4WF9_049

Geometric discrepancy: 0.2831

The information below is about HL_4WF9_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6GZZ|1|A1|C|2262
6GZZ|1|A1|U|2263
6GZZ|1|A1|G|2264
6GZZ|1|A1|G|2265
6GZZ|1|A1|G|2266
6GZZ|1|A1|G|2267
6GZZ|1|A1|C|2268
6GZZ|1|A1|G|2269
6GZZ|1|A1|G|2270

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain L1

50S ribosomal protein L16

Chain V1

50S ribosomal protein L27