HL_6GZZ_078

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CGGACCACCG

Length

10 nucleotides

Bulged bases

6GZZ|1|A2|G|439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZZ_078 not in the Motif Atlas

Geometric match to HL_3D0U_002

Geometric discrepancy: 0.3429

The information below is about HL_3D0U_002

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

6GZZ|1|A2|C|437
6GZZ|1|A2|G|438
6GZZ|1|A2|G|439
6GZZ|1|A2|A|440
6GZZ|1|A2|C|441
6GZZ|1|A2|C|442
6GZZ|1|A2|A|443
6GZZ|1|A2|C|444
6GZZ|1|A2|C|445
6GZZ|1|A2|G|446

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain K2

50S ribosomal protein L15