HL_6GZZ_084

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZZ_084 not in the Motif Atlas

Homologous match to HL_4WF9_020

Geometric discrepancy: 0.2526

The information below is about HL_4WF9_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6GZZ|1|A2|G|656
6GZZ|1|A2|G|657
6GZZ|1|A2|A|658
6GZZ|1|A2|A|659
6GZZ|1|A2|A|660
6GZZ|1|A2|C|661

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain K2

50S ribosomal protein L15

Chain d2

50S ribosomal protein L35