HL_6GZZ_085

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CGAACAG

Length

7 nucleotides

Bulged bases

6GZZ|1|A2|C|672

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZZ_085 not in the Motif Atlas

Homologous match to HL_9DFE_019

Geometric discrepancy: 0.4942

The information below is about HL_9DFE_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6GZZ|1|A2|C|668
6GZZ|1|A2|G|669
6GZZ|1|A2|A|670
6GZZ|1|A2|A|671
6GZZ|1|A2|C|672
6GZZ|1|A2|A|673
6GZZ|1|A2|G|674

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain b2

50S ribosomal protein L33

Chain d2

50S ribosomal protein L35