HL_6GZZ_086

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GGGUGAGACC

Length

10 nucleotides

Bulged bases

6GZZ|1|A2|U|763, 6GZZ|1|A2|G|764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZZ_086 not in the Motif Atlas

Geometric match to HL_5AMQ_001

Geometric discrepancy: 0.3803

The information below is about HL_5AMQ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.5

Basepair signature

cWW-F-F

Number of instances in this motif group

26

Unit IDs

6GZZ|1|A2|G|760
6GZZ|1|A2|G|761
6GZZ|1|A2|G|762
6GZZ|1|A2|U|763
6GZZ|1|A2|G|764
6GZZ|1|A2|A|765
6GZZ|1|A2|G|766
6GZZ|1|A2|A|767
6GZZ|1|A2|C|768
6GZZ|1|A2|C|769

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain A4

Small subunit ribosomal RNA; SSU rRNA

Chain O4

30S ribosomal protein S15

Chain Q4

30S ribosomal protein S17