HL_6GZZ_088

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

UGAAAAG

Length

7 nucleotides

Bulged bases

6GZZ|1|A2|A|830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZZ_088 not in the Motif Atlas

Homologous match to HL_4WF9_024

Geometric discrepancy: 0.3782

The information below is about HL_4WF9_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92935.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

5

Unit IDs

6GZZ|1|A2|U|828
6GZZ|1|A2|G|829
6GZZ|1|A2|A|830
6GZZ|1|A2|A|831
6GZZ|1|A2|A|832
6GZZ|1|A2|A|833
6GZZ|1|A2|G|834

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain C2

50S ribosomal protein L2