HL_6GZZ_090

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GCUAGGGGGCCCACCAGCCUACCAAAC

Length

27 nucleotides

Bulged bases

6GZZ|1|A2|C|937, 6GZZ|1|A2|C|942, 6GZZ|1|A2|U|943, 6GZZ|1|A2|A|944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZZ|1|A2|G|924
6GZZ|1|A2|C|925
6GZZ|1|A2|U|926
6GZZ|1|A2|A|927
6GZZ|1|A2|G|928
6GZZ|1|A2|G|929
6GZZ|1|A2|G|930
6GZZ|1|A2|G|931
6GZZ|1|A2|G|932
6GZZ|1|A2|C|933
6GZZ|1|A2|C|934
6GZZ|1|A2|C|935
6GZZ|1|A2|A|936
6GZZ|1|A2|C|937
6GZZ|1|A2|C|938
6GZZ|1|A2|A|939
6GZZ|1|A2|G|940
6GZZ|1|A2|C|941
6GZZ|1|A2|C|942
6GZZ|1|A2|U|943
6GZZ|1|A2|A|944
6GZZ|1|A2|C|945
6GZZ|1|A2|C|946
6GZZ|1|A2|A|947
6GZZ|1|A2|A|948
6GZZ|1|A2|A|949
6GZZ|1|A2|C|950

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain L2

50S ribosomal protein L16

Chain M4

30S ribosomal protein S13

Chain U2

50S ribosomal protein L25