HL_6GZZ_099

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

6GZZ|1|A2|A|1440, 6GZZ|1|A2|U|1444, 6GZZ|1|A2|U|1445

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZZ_099 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.5679

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6GZZ|1|A2|G|1437
6GZZ|1|A2|U|1438
6GZZ|1|A2|U|1439
6GZZ|1|A2|A|1440
6GZZ|1|A2|A|1441
6GZZ|1|A2|U|1442
6GZZ|1|A2|A|1443
6GZZ|1|A2|U|1444
6GZZ|1|A2|U|1445
6GZZ|1|A2|C|1446

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain S2

50S ribosomal protein L23