HL_6GZZ_111

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

6GZZ|1|A2|U|1979

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZZ_111 not in the Motif Atlas

Homologous match to HL_4WF9_046

Geometric discrepancy: 0.2547

The information below is about HL_4WF9_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6GZZ|1|A2|G|1973
6GZZ|1|A2|G|1974
6GZZ|1|A2|U|1975
6GZZ|1|A2|A|1976
6GZZ|1|A2|A|1977
6GZZ|1|A2|G|1978
6GZZ|1|A2|U|1979
6GZZ|1|A2|U|1980
6GZZ|1|A2|C|1981

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain A4

Small subunit ribosomal RNA; SSU rRNA

Chain J2

50S ribosomal protein L14