HL_6GZZ_112

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

6GZZ|1|A2|A|2054, 6GZZ|1|A2|A|2055, 6GZZ|1|A2|G|2056

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZZ_112 not in the Motif Atlas

Homologous match to HL_7A0S_049

Geometric discrepancy: 0.2923

The information below is about HL_7A0S_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6GZZ|1|A2|G|2051
6GZZ|1|A2|U|2052
6GZZ|1|A2|G|2053
6GZZ|1|A2|A|2054
6GZZ|1|A2|A|2055
6GZZ|1|A2|G|2056
6GZZ|1|A2|A|2057
6GZZ|1|A2|U|2058
6GZZ|1|A2|G|2059
6GZZ|1|A2|C|2060

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain D2

50S ribosomal protein L3

Chain Q2

50S ribosomal protein L21

Chain a2

50S ribosomal protein L32