HL_6GZZ_113

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

UCUUGGUCGCGCCUGCGUAGGAUAGGUGGGAGCCUGUGAACCCCCGCCUCCGGGUGGGGGGGAGGCGCCGGUGAAAUACCACCCUGGCGCGGCUGGGG

Length

98 nucleotides

Bulged bases

6GZZ|1|A2|G|2136, 6GZZ|1|A2|U|2137, 6GZZ|1|A2|A|2138, 6GZZ|1|A2|A|2143, 6GZZ|1|A2|U|2154, 6GZZ|1|A2|U|2156, 6GZZ|1|A2|C|2163, 6GZZ|1|A2|C|2164, 6GZZ|1|A2|C|2166, 6GZZ|1|A2|G|2171, 6GZZ|1|A2|C|2185, 6GZZ|1|A2|G|2190, 6GZZ|1|A2|U|2191, 6GZZ|1|A2|A|2195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZZ|1|A2|U|2120
6GZZ|1|A2|C|2121
6GZZ|1|A2|U|2122
6GZZ|1|A2|U|2123
6GZZ|1|A2|G|2124
6GZZ|1|A2|G|2125
6GZZ|1|A2|U|2126
6GZZ|1|A2|C|2127
6GZZ|1|A2|G|2128
6GZZ|1|A2|C|2129
6GZZ|1|A2|G|2130
6GZZ|1|A2|C|2131
6GZZ|1|A2|C|2132
6GZZ|1|A2|U|2133
6GZZ|1|A2|G|2134
6GZZ|1|A2|C|2135
6GZZ|1|A2|G|2136
6GZZ|1|A2|U|2137
6GZZ|1|A2|A|2138
6GZZ|1|A2|G|2139
6GZZ|1|A2|G|2140
6GZZ|1|A2|A|2141
6GZZ|1|A2|U|2142
6GZZ|1|A2|A|2143
6GZZ|1|A2|G|2144
6GZZ|1|A2|G|2145
6GZZ|1|A2|U|2146
6GZZ|1|A2|G|2147
6GZZ|1|A2|G|2148
6GZZ|1|A2|G|2149
6GZZ|1|A2|A|2150
6GZZ|1|A2|G|2151
6GZZ|1|A2|C|2152
6GZZ|1|A2|C|2153
6GZZ|1|A2|U|2154
6GZZ|1|A2|G|2155
6GZZ|1|A2|U|2156
6GZZ|1|A2|G|2157
6GZZ|1|A2|A|2158
6GZZ|1|A2|A|2159
6GZZ|1|A2|C|2160
6GZZ|1|A2|C|2161
6GZZ|1|A2|C|2162
6GZZ|1|A2|C|2163
6GZZ|1|A2|C|2164
6GZZ|1|A2|G|2165
6GZZ|1|A2|C|2166
6GZZ|1|A2|C|2167
6GZZ|1|A2|U|2168
6GZZ|1|A2|C|2169
6GZZ|1|A2|C|2170
6GZZ|1|A2|G|2171
6GZZ|1|A2|G|2172
6GZZ|1|A2|G|2173
6GZZ|1|A2|U|2174
6GZZ|1|A2|G|2175
6GZZ|1|A2|G|2176
6GZZ|1|A2|G|2177
6GZZ|1|A2|G|2178
6GZZ|1|A2|G|2179
6GZZ|1|A2|G|2180
6GZZ|1|A2|G|2181
6GZZ|1|A2|A|2182
6GZZ|1|A2|G|2183
6GZZ|1|A2|G|2184
6GZZ|1|A2|C|2185
6GZZ|1|A2|G|2186
6GZZ|1|A2|C|2187
6GZZ|1|A2|C|2188
6GZZ|1|A2|G|2189
6GZZ|1|A2|G|2190
6GZZ|1|A2|U|2191
6GZZ|1|A2|G|2192
6GZZ|1|A2|A|2193
6GZZ|1|A2|A|2194
6GZZ|1|A2|A|2195
6GZZ|1|A2|U|2196
6GZZ|1|A2|A|2197
6GZZ|1|A2|C|2198
6GZZ|1|A2|C|2199
6GZZ|1|A2|A|2200
6GZZ|1|A2|C|2201
6GZZ|1|A2|C|2202
6GZZ|1|A2|C|2203
6GZZ|1|A2|U|2204
6GZZ|1|A2|G|2205
6GZZ|1|A2|G|2206
6GZZ|1|A2|C|2207
6GZZ|1|A2|G|2208
6GZZ|1|A2|C|2209
6GZZ|1|A2|G|2210
6GZZ|1|A2|G|2211
6GZZ|1|A2|C|2212
6GZZ|1|A2|U|2213
6GZZ|1|A2|G|2214
6GZZ|1|A2|G|2215
6GZZ|1|A2|G|2216
6GZZ|1|A2|G|2217

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain H2

50S ribosomal protein L9

Chain J3

30S ribosomal protein S10