HL_6GZZ_119

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GCGAAAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZZ_119 not in the Motif Atlas

Geometric match to HL_8VTW_025

Geometric discrepancy: 0.3988

The information below is about HL_8VTW_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_29735.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6GZZ|1|A2|G|2387
6GZZ|1|A2|C|2388
6GZZ|1|A2|G|2389
6GZZ|1|A2|A|2390
6GZZ|1|A2|A|2391
6GZZ|1|A2|A|2392
6GZZ|1|A2|G|2393
6GZZ|1|A2|C|2394

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain N2

50S ribosomal protein L18

Chain V2

50S ribosomal protein L27

Chain b2

50S ribosomal protein L33