HL_6GZZ_123

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GCUGUUCGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZZ_123 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.3764

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.3

Basepair signature

cWW-F

Number of instances in this motif group

5

Unit IDs

6GZZ|1|A2|G|2564
6GZZ|1|A2|C|2565
6GZZ|1|A2|U|2566
6GZZ|1|A2|G|2567
6GZZ|1|A2|U|2568
6GZZ|1|A2|U|2569
6GZZ|1|A2|C|2570
6GZZ|1|A2|G|2571
6GZZ|1|A2|C|2572

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain J2

50S ribosomal protein L14