HL_6GZZ_125

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZZ_125 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.2698

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

6GZZ|1|A2|C|2672
6GZZ|1|A2|G|2673
6GZZ|1|A2|A|2674
6GZZ|1|A2|G|2675
6GZZ|1|A2|A|2676
6GZZ|1|A2|G|2677

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain G2

50S ribosomal protein L6