HL_6GZZ_127

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GCUGAAAGCAUCUAAGC

Length

17 nucleotides

Bulged bases

6GZZ|1|A2|G|2766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZZ_127 not in the Motif Atlas

Homologous match to HL_7A0S_074

Geometric discrepancy: 0.3973

The information below is about HL_7A0S_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28904.1

Basepair signature

cWW-F-F-tWH-cWH-tSH-tHW-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

6GZZ|1|A2|G|2759
6GZZ|1|A2|C|2760
6GZZ|1|A2|U|2761
6GZZ|1|A2|G|2762
6GZZ|1|A2|A|2763
6GZZ|1|A2|A|2764
6GZZ|1|A2|A|2765
6GZZ|1|A2|G|2766
6GZZ|1|A2|C|2767
6GZZ|1|A2|A|2768
6GZZ|1|A2|U|2769
6GZZ|1|A2|C|2770
6GZZ|1|A2|U|2771
6GZZ|1|A2|A|2772
6GZZ|1|A2|A|2773
6GZZ|1|A2|G|2774
6GZZ|1|A2|C|2775

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain G2

50S ribosomal protein L6

Chain I2

50S ribosomal protein L13

Chain e2

50S ribosomal protein L36