HL_6GZZ_129

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZZ_129 not in the Motif Atlas

Homologous match to HL_7RQB_069

Geometric discrepancy: 0.3012

The information below is about HL_7RQB_069

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

6GZZ|1|A2|C|2868
6GZZ|1|A2|G|2869
6GZZ|1|A2|C|2870
6GZZ|1|A2|G|2871
6GZZ|1|A2|A|2872
6GZZ|1|A2|G|2873

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain O2

50S ribosomal protein L19