HL_6GZZ_133

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CCUUGG

Length

6 nucleotides

Bulged bases

6GZZ|1|A3|U|189, 6GZZ|1|A3|G|190

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZZ_133 not in the Motif Atlas

Homologous match to HL_6CZR_075

Geometric discrepancy: 0.4678

The information below is about HL_6CZR_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.4

Basepair signature

cWW-F-F

Number of instances in this motif group

28

Unit IDs

6GZZ|1|A3|C|186
6GZZ|1|A3|C|187
6GZZ|1|A3|U|188
6GZZ|1|A3|U|189
6GZZ|1|A3|G|190
6GZZ|1|A3|G|191

Current chains

Chain A3

16S ribosomal RNA

Nearby chains

Chain Q3

30S ribosomal protein S17

Chain T3

30S ribosomal protein S20