HL_6GZZ_138

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

6GZZ|1|A3|A|339

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZZ_138 not in the Motif Atlas

Homologous match to HL_4LFB_009

Geometric discrepancy: 0.3107

The information below is about HL_4LFB_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6GZZ|1|A3|C|337
6GZZ|1|A3|U|338
6GZZ|1|A3|A|339
6GZZ|1|A3|C|340
6GZZ|1|A3|G|341
6GZZ|1|A3|G|342

Current chains

Chain A3

16S ribosomal RNA

Nearby chains

Chain J1

50S ribosomal protein L14

Chain O1

50S ribosomal protein L19