HL_6GZZ_139

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZZ_139 not in the Motif Atlas

Homologous match to HL_6CZR_081

Geometric discrepancy: 0.2925

The information below is about HL_6CZR_081

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6GZZ|1|A3|C|374
6GZZ|1|A3|G|375
6GZZ|1|A3|C|376
6GZZ|1|A3|A|377
6GZZ|1|A3|A|378
6GZZ|1|A3|G|379

Current chains

Chain A3

16S ribosomal RNA

Nearby chains

Chain P3

30S ribosomal protein S16