HL_6GZZ_167

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GGCGCAAGCC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZZ_167 not in the Motif Atlas

Geometric match to HL_7KI3_001

Geometric discrepancy: 0.2035

The information below is about HL_7KI3_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6GZZ|1|A4|G|372
6GZZ|1|A4|G|373
6GZZ|1|A4|C|374
6GZZ|1|A4|G|375
6GZZ|1|A4|C|376
6GZZ|1|A4|A|377
6GZZ|1|A4|A|378
6GZZ|1|A4|G|379
6GZZ|1|A4|C|380
6GZZ|1|A4|C|381

Current chains

Chain A4

16S ribosomal RNA

Nearby chains

Chain P4

30S ribosomal protein S16