HL_6GZZ_172

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GGAGUAGCGGUGAAAUGCGCAGAUACC

Length

27 nucleotides

Bulged bases

6GZZ|1|A4|A|685, 6GZZ|1|A4|G|686

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZZ|1|A4|G|665
6GZZ|1|A4|G|666
6GZZ|1|A4|A|667
6GZZ|1|A4|G|668
6GZZ|1|A4|U|669
6GZZ|1|A4|A|670
6GZZ|1|A4|G|671
6GZZ|1|A4|C|672
6GZZ|1|A4|G|673
6GZZ|1|A4|G|674
6GZZ|1|A4|U|675
6GZZ|1|A4|G|676
6GZZ|1|A4|A|677
6GZZ|1|A4|A|678
6GZZ|1|A4|A|679
6GZZ|1|A4|U|680
6GZZ|1|A4|G|681
6GZZ|1|A4|C|682
6GZZ|1|A4|G|683
6GZZ|1|A4|C|684
6GZZ|1|A4|A|685
6GZZ|1|A4|G|686
6GZZ|1|A4|A|687
6GZZ|1|A4|U|688
6GZZ|1|A4|A|689
6GZZ|1|A4|C|690
6GZZ|1|A4|C|691

Current chains

Chain A4

16S ribosomal RNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain G4

30S ribosomal protein S7

Chain K4

30S ribosomal protein S11

Chain V4

Ribosome hibernation promoting factor