HL_6GZZ_178

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GGUGAAAGCC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZZ_178 not in the Motif Atlas

Geometric match to HL_8KAL_008

Geometric discrepancy: 0.3377

The information below is about HL_8KAL_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6GZZ|1|A4|G|988
6GZZ|1|A4|G|989
6GZZ|1|A4|U|990
6GZZ|1|A4|G|991
6GZZ|1|A4|A|992
6GZZ|1|A4|A|993
6GZZ|1|A4|A|994
6GZZ|1|A4|G|995
6GZZ|1|A4|C|996
6GZZ|1|A4|C|997

Current chains

Chain A4

16S ribosomal RNA

Nearby chains

Chain N4

30S ribosomal protein S14 type Z

Chain S4

30S ribosomal protein S19