HL_6GZZ_210

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GCGAAGACAGCCAGGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAGUGCGUAAUAGCUCACUGGUCGAGU

Length

72 nucleotides

Bulged bases

6GZZ|1|A2|A|1094, 6GZZ|1|A2|U|1109, 6GZZ|1|A2|G|1116, 6GZZ|1|A2|A|1121, 6GZZ|1|A2|G|1122, 6GZZ|1|A2|U|1129, 6GZZ|1|A2|U|1131, 6GZZ|1|A2|A|1132, 6GZZ|1|A2|A|1133, 6GZZ|1|A2|A|1143, 6GZZ|1|A2|G|1158, 6GZZ|1|A2|A|1159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZZ|1|A2|G|1090
6GZZ|1|A2|C|1091
6GZZ|1|A2|G|1092
6GZZ|1|A2|A|1093
6GZZ|1|A2|A|1094
6GZZ|1|A2|G|1095
6GZZ|1|A2|A|1096
6GZZ|1|A2|C|1097
6GZZ|1|A2|A|1098
6GZZ|1|A2|G|1099
6GZZ|1|A2|C|1100
6GZZ|1|A2|C|1101
6GZZ|1|A2|A|1102
6GZZ|1|A2|G|1103
6GZZ|1|A2|G|1104
6GZZ|1|A2|A|1105
6GZZ|1|A2|U|1106
6GZZ|1|A2|G|1107
6GZZ|1|A2|U|1108
6GZZ|1|A2|U|1109
6GZZ|1|A2|G|1110
6GZZ|1|A2|G|1111
6GZZ|1|A2|C|1112
6GZZ|1|A2|U|1113
6GZZ|1|A2|U|1114
6GZZ|1|A2|A|1115
6GZZ|1|A2|G|1116
6GZZ|1|A2|A|1117
6GZZ|1|A2|A|1118
6GZZ|1|A2|G|1119
6GZZ|1|A2|C|1120
6GZZ|1|A2|A|1121
6GZZ|1|A2|G|1122
6GZZ|1|A2|C|1123
6GZZ|1|A2|C|1124
6GZZ|1|A2|A|1125
6GZZ|1|A2|U|1126
6GZZ|1|A2|C|1127
6GZZ|1|A2|A|1128
6GZZ|1|A2|U|1129
6GZZ|1|A2|U|1130
6GZZ|1|A2|U|1131
6GZZ|1|A2|A|1132
6GZZ|1|A2|A|1133
6GZZ|1|A2|A|1134
6GZZ|1|A2|G|1135
6GZZ|1|A2|A|1136
6GZZ|1|A2|G|1137
6GZZ|1|A2|U|1138
6GZZ|1|A2|G|1139
6GZZ|1|A2|C|1140
6GZZ|1|A2|G|1141
6GZZ|1|A2|U|1142
6GZZ|1|A2|A|1143
6GZZ|1|A2|A|1144
6GZZ|1|A2|U|1145
6GZZ|1|A2|A|1146
6GZZ|1|A2|G|1147
6GZZ|1|A2|C|1148
6GZZ|1|A2|U|1149
6GZZ|1|A2|C|1150
6GZZ|1|A2|A|1151
6GZZ|1|A2|C|1152
6GZZ|1|A2|U|1153
6GZZ|1|A2|G|1154
6GZZ|1|A2|G|1155
6GZZ|1|A2|U|1156
6GZZ|1|A2|C|1157
6GZZ|1|A2|G|1158
6GZZ|1|A2|A|1159
6GZZ|1|A2|G|1160
6GZZ|1|A2|U|1161

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain G2

50S ribosomal protein L6

Chain e2

50S ribosomal protein L36