HL_6GZZ_231

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GCCGUGAGGU

Length

10 nucleotides

Bulged bases

6GZZ|1|A4|A|1062

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZZ_231 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3687

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

6GZZ|1|A4|G|1056
6GZZ|1|A4|C|1057
6GZZ|1|A4|C|1058
6GZZ|1|A4|G|1059
6GZZ|1|A4|U|1060
6GZZ|1|A4|G|1061
6GZZ|1|A4|A|1062
6GZZ|1|A4|G|1063
6GZZ|1|A4|G|1064
6GZZ|1|A4|U|1065

Current chains

Chain A4

16S ribosomal RNA

Nearby chains

Chain B4

30S ribosomal protein S2

Chain E4

30S ribosomal protein S5