HL_6GZZ_232

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GUUAGUUGCCAGCGGUUCGGCCGGGCACUCUAAC

Length

34 nucleotides

Bulged bases

6GZZ|1|A4|U|1107, 6GZZ|1|A4|C|1111, 6GZZ|1|A4|U|1118, 6GZZ|1|A4|C|1119, 6GZZ|1|A4|C|1123

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZZ|1|A4|G|1102
6GZZ|1|A4|U|1103
6GZZ|1|A4|U|1104
6GZZ|1|A4|A|1105
6GZZ|1|A4|G|1106
6GZZ|1|A4|U|1107
6GZZ|1|A4|U|1108
6GZZ|1|A4|G|1109
6GZZ|1|A4|C|1110
6GZZ|1|A4|C|1111
6GZZ|1|A4|A|1112
6GZZ|1|A4|G|1113
6GZZ|1|A4|C|1114
6GZZ|1|A4|G|1115
6GZZ|1|A4|G|1116
6GZZ|1|A4|U|1117
6GZZ|1|A4|U|1118
6GZZ|1|A4|C|1119
6GZZ|1|A4|G|1120
6GZZ|1|A4|G|1121
6GZZ|1|A4|C|1122
6GZZ|1|A4|C|1123
6GZZ|1|A4|G|1124
6GZZ|1|A4|G|1125
6GZZ|1|A4|G|1126
6GZZ|1|A4|C|1127
6GZZ|1|A4|A|1128
6GZZ|1|A4|C|1129
6GZZ|1|A4|U|1130
6GZZ|1|A4|C|1131
6GZZ|1|A4|U|1132
6GZZ|1|A4|A|1133
6GZZ|1|A4|A|1134
6GZZ|1|A4|C|1135

Current chains

Chain A4

16S ribosomal RNA

Nearby chains

Chain I4

30S ribosomal protein S9

Chain J4

30S ribosomal protein S10