HL_6GZZ_235

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GCCGAUGGUACUGGGCGGGCGACCGCCUGGGAGAGUAGGU

Length

40 nucleotides

Bulged bases

6GZZ|1|B1|C|97

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZZ|1|B1|G|71
6GZZ|1|B1|C|72
6GZZ|1|B1|C|73
6GZZ|1|B1|G|74
6GZZ|1|B1|A|75
6GZZ|1|B1|U|76
6GZZ|1|B1|G|77
6GZZ|1|B1|G|78
6GZZ|1|B1|U|79
6GZZ|1|B1|A|80
6GZZ|1|B1|C|81
6GZZ|1|B1|U|82
6GZZ|1|B1|G|83
6GZZ|1|B1|G|84
6GZZ|1|B1|G|85
6GZZ|1|B1|C|86
6GZZ|1|B1|G|87
6GZZ|1|B1|G|88
6GZZ|1|B1|G|89
6GZZ|1|B1|C|90
6GZZ|1|B1|G|91
6GZZ|1|B1|A|92
6GZZ|1|B1|C|93
6GZZ|1|B1|C|94
6GZZ|1|B1|G|95
6GZZ|1|B1|C|96
6GZZ|1|B1|C|97
6GZZ|1|B1|U|98
6GZZ|1|B1|G|99
6GZZ|1|B1|G|100
6GZZ|1|B1|G|101
6GZZ|1|B1|A|102
6GZZ|1|B1|G|103
6GZZ|1|B1|A|104
6GZZ|1|B1|G|105
6GZZ|1|B1|U|106
6GZZ|1|B1|A|107
6GZZ|1|B1|G|108
6GZZ|1|B1|G|109
6GZZ|1|B1|U|110

Current chains

Chain B1

5S ribosomal RNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain L1

50S ribosomal protein L16

Chain U1

50S ribosomal protein L25

Chain V1

50S ribosomal protein L27

Chain Y1

50S ribosomal protein L30