HL_6H4N_010

3D structure

PDB id

6H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

6H4N|1|A|G|329, 6H4N|1|A|A|330, 6H4N|1|A|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6H4N_010 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.103

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

6H4N|1|A|G|327
6H4N|1|A|U|328
6H4N|1|A|G|329
6H4N|1|A|A|330
6H4N|1|A|C|331
6H4N|1|A|A|332
6H4N|1|A|G|333
6H4N|1|A|C|334
6H4N|1|A|C|335

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24