HL_6H4N_050

3D structure

PDB id

6H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

ACGCCAGU

Length

8 nucleotides

Bulged bases

6H4N|1|A|C|2145, 6H4N|1|A|C|2146

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6H4N_050 not in the Motif Atlas

Geometric match to HL_3DIL_004

Geometric discrepancy: 0.3948

The information below is about HL_3DIL_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78347.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6H4N|1|A|A|2142
6H4N|1|A|C|2143
6H4N|1|A|G|2144
6H4N|1|A|C|2145
6H4N|1|A|C|2146
6H4N|1|A|A|2147
6H4N|1|A|G|2148
6H4N|1|A|U|2149

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain k

30S ribosomal protein S11

Chain w

Transfer RNA; tRNA