HL_6H4N_065

3D structure

PDB id

6H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6H4N|1|A|G|2751, 6H4N|1|A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6H4N_065 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0762

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6H4N|1|A|C|2745
6H4N|1|A|U|2746
6H4N|1|A|G|2747
6H4N|1|A|A|2748
6H4N|1|A|A|2749
6H4N|1|A|A|2750
6H4N|1|A|G|2751
6H4N|1|A|C|2752
6H4N|1|A|A|2753
6H4N|1|A|U|2754
6H4N|1|A|C|2755
6H4N|1|A|U|2756
6H4N|1|A|A|2757
6H4N|1|A|A|2758
6H4N|1|A|G|2759

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain G

50S ribosomal protein L6

Chain J

50S ribosomal protein L13