3D structure

PDB id
6H58 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
7.9 Å

Loop

Sequence
UUUUGUAUAA
Length
10 nucleotides
Bulged bases
6H58|1|AA|A|574
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6H58_084 not in the Motif Atlas
Geometric match to HL_5J7L_150
Geometric discrepancy: 0.1311
The information below is about HL_5J7L_150
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_28252.9
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
141

Unit IDs

6H58|1|AA|U|566
6H58|1|AA|U|567
6H58|1|AA|U|568
6H58|1|AA|U|569
6H58|1|AA|G|570
6H58|1|AA|U|571
6H58|1|AA|A|572
6H58|1|AA|U|573
6H58|1|AA|A|574
6H58|1|AA|A|575

Current chains

Chain AA
23S ribosomal RNA

Nearby chains

Chain 00
50S ribosomal protein L32
Chain DD
50S ribosomal protein L3
Chain LL
50S ribosomal protein L15
Chain QQ
50S ribosomal protein L20
Chain RR
50S ribosomal protein L21

Coloring options:


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