HL_6H58_094

3D structure

PDB id

6H58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6H58_094 not in the Motif Atlas

Geometric match to HL_4WF9_028

Geometric discrepancy: 0.1708

The information below is about HL_4WF9_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6H58|1|AA|G|978
6H58|1|AA|A|979
6H58|1|AA|A|980
6H58|1|AA|A|981
6H58|1|AA|C|982
6H58|1|AA|A|983
6H58|1|AA|A|984
6H58|1|AA|C|985

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain QQ

50S ribosomal protein L20

Chain RR

50S ribosomal protein L21

Chain ZZ

50S ribosomal protein L30