HL_6H58_117

3D structure

PDB id

6H58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

6H58|1|AA|A|2030, 6H58|1|AA|A|2031, 6H58|1|AA|G|2032

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6H58_117 not in the Motif Atlas

Geometric match to HL_4WF9_047

Geometric discrepancy: 0.1288

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

6H58|1|AA|G|2027
6H58|1|AA|U|2028
6H58|1|AA|G|2029
6H58|1|AA|A|2030
6H58|1|AA|A|2031
6H58|1|AA|G|2032
6H58|1|AA|A|2033
6H58|1|AA|U|2034
6H58|1|AA|G|2035
6H58|1|AA|C|2036

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain 00

50S ribosomal protein L32

Chain DD

50S ribosomal protein L3

Chain RR

50S ribosomal protein L21