HL_6H58_122

3D structure

PDB id

6H58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6H58_122 not in the Motif Atlas

Geometric match to HL_7RQB_055

Geometric discrepancy: 0.167

The information below is about HL_7RQB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6H58|1|AA|G|2303
6H58|1|AA|G|2304
6H58|1|AA|U|2305
6H58|1|AA|C|2306
6H58|1|AA|G|2307
6H58|1|AA|G|2308
6H58|1|AA|A|2309
6H58|1|AA|C|2310
6H58|1|AA|A|2311
6H58|1|AA|U|2312
6H58|1|AA|C|2313

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain FF

50S ribosomal protein L5