HL_6H58_135

3D structure

PDB id

6H58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

6H58|1|AA|A|2820

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6H58_135 not in the Motif Atlas

Geometric match to HL_5J7L_201

Geometric discrepancy: 0.0587

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6H58|1|AA|G|2819
6H58|1|AA|A|2820
6H58|1|AA|A|2821
6H58|1|AA|G|2822
6H58|1|AA|A|2823
6H58|1|AA|C|2824
6H58|1|AA|G|2825
6H58|1|AA|A|2826
6H58|1|AA|C|2827

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain DD

50S ribosomal protein L3

Chain NN

50S ribosomal protein L17