HL_6H58_179

3D structure

PDB id

6H58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6H58_179 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0898

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6H58|1|aa|A|320
6H58|1|aa|A|321
6H58|1|aa|C|322
6H58|1|aa|U|323
6H58|1|aa|G|324
6H58|1|aa|A|325
6H58|1|aa|G|326
6H58|1|aa|A|327
6H58|1|aa|C|328
6H58|1|aa|A|329
6H58|1|aa|C|330
6H58|1|aa|G|331
6H58|1|aa|G|332
6H58|1|aa|U|333

Current chains

Chain aa

16S ribosomal RNA

Nearby chains

Chain pp

30S ribosomal protein S16

Chain tt

30S ribosomal protein S20