3D structure

PDB id
6H58 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
7.9 Å

Loop

Sequence
AGAGAU
Length
6 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6H58_193 not in the Motif Atlas
Homologous match to HL_4LFB_022
Geometric discrepancy: 0.2285
The information below is about HL_4LFB_022
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_34789.1
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
335

Unit IDs

6H58|1|aa|A|1012
6H58|1|aa|G|1013
6H58|1|aa|A|1014
6H58|1|aa|G|1015
6H58|1|aa|A|1016
6H58|1|aa|U|1017

Current chains

Chain aa
16S ribosomal RNA

Nearby chains

Chain nn
30S ribosomal protein S14
Chain ss
30S ribosomal protein S19

Coloring options:


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