3D structure

PDB id
6H58 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
7.9 Å

Loop

Sequence
UGAUAAA
Length
7 nucleotides
Bulged bases
6H58|1|aa|U|1168
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6H58_197 not in the Motif Atlas
Homologous match to HL_4LFB_027
Geometric discrepancy: 0.3074
The information below is about HL_4LFB_027
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_34789.1
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
335

Unit IDs

6H58|1|aa|U|1165
6H58|1|aa|G|1166
6H58|1|aa|A|1167
6H58|1|aa|U|1168
6H58|1|aa|A|1169
6H58|1|aa|A|1170
6H58|1|aa|A|1171

Current chains

Chain aa
16S ribosomal RNA

Nearby chains

Chain bb
30S ribosomal protein S2
Chain uu
30S ribosomal protein S21
Chain vv
Ribosome modulation factor
Chain yy
30S ribosomal protein S1

Coloring options:


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